RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA674048", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14672061 14672061 PRJNA674048_P_NODE_1292_length_1037_cov_7.488866_g1178_i0 PRJNA674048 1292 1037 7.488866 77.65954042 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 327 1.56e-84   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g1178 i0 79.633 60.7203471552555 491 72 69 20 388 859 20167 19686 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 62967 327 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
29449896 29449896 PRJNA674048_P_NODE_23130_length_183_cov_1.365672_g22927_i0 PRJNA674048 23130 183 1.365672 2.49917976 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 48.9 1.11e-4   NR SPQ98635.1 37360 g22927 i0 44.2 3.73770491803279 52 29 85.2 0 26 181 337 388 SPQ98635.1 unnamed protein product [Plasmodiophora brassicae] diamond 684 48.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31124066 31124066 PRJNA674048_P_NODE_28835_length_167_cov_0.881356_g28632_i0 PRJNA674048 28835 167 0.881356 1.47186452 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 50.1 3.47e-5   NR CEP00115.1 37360 g28632 i0 46.8 2.55089820359281 47 25 84.4 0 9 149 626 672 CEP00115.1 hypothetical protein PBRA_007849 [Plasmodiophora brassicae] diamond 426 50.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32453271 32453271 PRJNA674048_P_NODE_27719_length_168_cov_0.873950_g27516_i0 PRJNA674048 27719 168 0.87395 1.468236 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67.8 1.94e-11   NR SPQ97440.1 37360 g27516 i0 67.9 0.946428571428571 53 15 94.6 1 8 166 209 259 SPQ97440.1 unnamed protein product [Plasmodiophora brassicae] diamond 159 67.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;