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contig_metadata

13 rows where bioproject = "PRJNA674048", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJNA674048 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1919177 1919177 PRJNA674048_P_NODE_10562_length_288_cov_2.343096_g10359_i0 PRJNA674048 10562 288 2.343096 6.74811648 Caenorhabditis elegans 6239 Nematoda Nematoda 532 7.8e-147   NTclustered gi|1972267169|ref|NM_069484.3| 6239 g10359 i0 100 3 288 0 100 0 1 288 482 195 Caenorhabditis elegans Uncharacterized protein (Y43C5A.4), mRNA blastn 864 532 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3193942 3193942 PRJNA674048_P_NODE_17163_length_214_cov_3.018182_g16960_i0 PRJNA674048 17163 214 3.018182 6.45890948 Caenorhabditis elegans 6239 Nematoda Nematoda 390 3.519999999999999e-104   NTclustered gi|687865476|emb|LK927750.1| 6239 g16960 i0 99.533 2 214 1 100 0 1 214 64875 64662 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000194 blastn 428 390 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4471108 4471108 PRJNA674048_P_NODE_29744_length_165_cov_2.637931_g29541_i0 PRJNA674048 29744 165 2.637931 4.35258615 Micoletzkya japonica 1250332 Nematoda Nematoda 147 6.149999999999999e-31   NTclustered gi|410992323|gb|JX163990.1| 1250332 g29541 i0 83.439 18.2545454545455 157 26 95 0 7 163 190 34 Micoletzkya japonica large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 3012 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya japonica
7021762 7021762 PRJNA674048_P_NODE_28846_length_167_cov_0.881356_g28643_i0 PRJNA674048 28846 167 0.881356 1.47186452 Caenorhabditis elegans 6239 Nematoda Nematoda 309 7.53e-80   NTclustered gi|687865476|emb|LK927750.1| 6239 g28643 i0 100 2 167 0 100 0 1 167 60812 60646 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000194 blastn 334 309 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8296496 8296496 PRJNA674048_P_NODE_3927_length_552_cov_2.019881_g3731_i0 PRJNA674048 3927 552 2.019881 11.14974312 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 289 1.3299999999999993e-87   NR VBB30983.1 6277 g3731 i0 76.8 21.0760869565217 185 42 100 1 1 552 677 861 VBB30983.1 unnamed protein product [Acanthocheilonema viteae] diamond 11634 291 0.993127147766323 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
17221252 17221252 PRJNA674048_P_NODE_6774_length_384_cov_2.695522_g6571_i0 PRJNA674048 6774 384 2.695522 10.35080448 Sachsia zurstrasseni 1538730 Nematoda Nematoda 106 2.77e-18   NTclustered gi|675118987|gb|KJ877373.1| 1538730 g6571 i0 95.455 1.59114583333333 66 3 17 0 319 384 410 345 Sachsia zurstrasseni large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 611 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sachsia Sachsia zurstrasseni
18495523 18495523 PRJNA674048_P_NODE_30595_length_164_cov_1.808696_g30392_i0 PRJNA674048 30595 164 1.808696 2.96626144 Loa loa 7209 Nematoda Nematoda 110 8.01e-20   NTclustered gi|1158592910|ref|XM_003138156.2| 7209 g30392 i0 84.211 61.5243902439024 114 17 69 1 45 157 1499 1386 Loa loa pre-mRNA-splicing factor ATP-dependent RNA helicase mRNA blastn 10090 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19770036 19770036 PRJNA674048_P_NODE_31816_length_163_cov_0.912281_g31613_i0 PRJNA674048 31816 163 0.912281 1.48701803 Strongyloides ratti 34506 Nematoda Nematoda 158 2.8e-34   NTclustered gi|1376143403|ref|XM_024652078.1| 34506 g31613 i0 84.146 84.361963190184 164 24 100 2 1 163 842 680 Strongyloides ratti Elongation factor 1-alpha (SRAE_2000115900), partial mRNA blastn 13751 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21045706 21045706 PRJNA674048_P_NODE_30997_length_164_cov_0.904348_g30794_i0 PRJNA674048 30997 164 0.904348 1.48313072 Opisthokonta 33154 Nematoda Nematoda 86.7 2.92e-19   NR VDP19351.1 241478 g30794 i0 77.8 1.97560975609756 54 12 98.8 0 162 1 124 177 VDP19351.1 unnamed protein product [Soboliphyme baturini] diamond 324 87.4 0.991990846681922 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
27536131 27536131 PRJNA674048_P_NODE_24563_length_177_cov_2.000000_g24360_i0 PRJNA674048 24563 177 2 3.54 Rhabditida 6236 Nematoda Nematoda 63.9 5.02e-11   NR KAK6039252.1 27828 g24360 i0 68.2 5.22033898305085 44 14 74.6 0 39 170 18 61 KAK6039252.1 hypothetical protein COOONC_23244 [Cooperia oncophora] diamond 924 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
27694212 27694212 PRJNA674048_P_NODE_27864_length_168_cov_0.873950_g27661_i0 PRJNA674048 27864 168 0.87395 1.468236 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.8 1.81e-5   NR MCP9257320.1 6287 g27661 i0 51.1 2.60714285714286 47 22 83.9 1 2 142 278 323 MCP9257320.1 Protein phosphatase 1L [Dirofilaria immitis] diamond 438 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
31946527 31946527 PRJNA674048_P_NODE_24437_length_178_cov_1.209302_g24234_i0 PRJNA674048 24437 178 1.209302 2.15255756 Trichinella britovi 45882 Nematoda Nematoda 53.1 1.79e-6   NR KRY44720.1 45882 g24234 i0 47.5 1.98876404494382 59 31 99.4 0 177 1 138 196 KRY44720.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] diamond 354 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
32053525 32053525 PRJNA674048_P_NODE_25098_length_175_cov_1.650794_g24895_i0 PRJNA674048 25098 175 1.650794 2.8888895 Rhabditida 6236 Nematoda Nematoda 45.4 0.00169   NR KAI1720537.1 166010 g24895 i0 38.2 2.82857142857143 55 32 90.9 1 166 8 139 193 KAI1720537.1 papain family cysteine protease domain-containing protein [Ditylenchus destructor] diamond 495 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;