RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA674048", tax_clade = "Luna-2 subcluster" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 1 ✖

tax_kingdom 1

tax_clade 1

  • Luna-2 subcluster · 1 ✖

bioproject 1

  • PRJNA674048 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20292660 20292660 PRJNA674048_P_NODE_6816_length_382_cov_16.360360_g6613_i0 PRJNA674048 6816 382 16.36036 62.4965752 Aurantimicrobium 1705353 Bacteria Bacteria 542 1.7699999999999999e-149   NTclustered gi|45260656|emb|AJ507464.2| 207604 g6613 i0 98.377 78.3429319371728 308 5 81 0 1 308 494 187 Actinobacterium MWH-Wo1 16S rRNA gene, ITS1, and partial 23S rRNA gene, strain MWH-Wo1 blastn 29927 542 1 Bacteria Luna-2 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   actinobacterium MWH-Wo1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;