RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA674048", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA674048 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8296398 8296398 PRJNA674048_P_NODE_22827_length_184_cov_1.488889_g22624_i0 PRJNA674048 22827 184 1.488889 2.73955576 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 291 3.05e-74   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g22624 i0 95.109 62.9782608695652 184 9 100 0 1 184 799594 799777 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 11588 291 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30934934 30934934 PRJNA674048_P_NODE_29354_length_166_cov_0.888889_g29151_i0 PRJNA674048 29354 166 0.888889 1.47555574 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 51.6 9.71e-6   NR MDN5276018.1 2026720 g29151 i0 45.1 1.73493975903614 51 28 92.2 0 14 166 277 327 MDN5276018.1 Laminin sub protein [Candidatus Saccharibacteria bacterium] diamond 288 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31377484 31377484 PRJNA674048_P_NODE_31256_length_164_cov_0.895652_g31053_i0 PRJNA674048 31256 164 0.895652 1.46886928 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 90.1 2.58e-19   NR HMS23989.1 2026720 g31053 i0 90.7 0.98780487804878 54 5 98.8 0 163 2 559 612 HMS23989.1 molecular chaperone DnaK [Candidatus Saccharibacteria bacterium] diamond 162 90.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32799680 32799680 PRJNA674048_P_NODE_27760_length_168_cov_0.873950_g27557_i0 PRJNA674048 27760 168 0.87395 1.468236 Candidatus Nanosynbacter featherlites 2572088 Bacteria Bacteria 99.4 7.76e-23   NR WP_138079334.1 2572088 g27557 i0 83.3 4.82142857142857 54 9 96.4 0 5 166 294 347 WP_138079334.1 cell division FtsA domain-containing protein [Candidatus Nanosynbacter featherlites] diamond 810 99.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter featherlites

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;