RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA674048", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA674048 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4471067 4471067 PRJNA674048_P_NODE_25744_length_173_cov_1.258065_g25541_i0 PRJNA674048 25744 173 1.258065 2.17645245 Spumochlamys perforata 675831 Tubulinea other_Eukaryota 320 3.61e-83   NTclustered gi|259595675|gb|FJ705339.1| 675831 g25541 i0 100 75.7861271676301 173 0 100 0 1 173 1538 1366 Spumochlamys perforata clone 2504 18S ribosomal RNA gene, partial sequence blastn 13111 320 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
9571569 9571569 PRJNA674048_P_NODE_17368_length_213_cov_1.719512_g17165_i0 PRJNA674048 17368 213 1.719512 3.66256056 Spumochlamys perforata 675831 Tubulinea other_Eukaryota 381 2.1e-101   NTclustered gi|259595675|gb|FJ705339.1| 675831 g17165 i0 99.061 10.849765258216 213 1 100 1 1 213 411 200 Spumochlamys perforata clone 2504 18S ribosomal RNA gene, partial sequence blastn 2311 381 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
19769939 19769939 PRJNA674048_P_NODE_19796_length_198_cov_2.167785_g19593_i0 PRJNA674048 19796 198 2.167785 4.2922143 Tubulinea group 04 sp. PPD16 1215999 Tubulinea other_Eukaryota 276 9.36e-70   NTclustered gi|399764279|gb|JQ271790.1| 1215999 g19593 i0 91.96 50.7575757575758 199 12 100 4 1 198 848 653 Tubulinea group 04 sp. PPD16 18S ribosomal RNA gene, partial sequence blastn 10050 276 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. PPD16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;