RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA674048", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 13 ✖

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA674048 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4471147 4471147 PRJNA674048_P_NODE_5704_length_430_cov_18.005249_g5501_i0 PRJNA674048 5704 430 18.005249 77.4225707 Vannella croatica 1778588 Discosea other_Eukaryota 599 1.1799999999999997e-166   NTclustered gi|973761167|gb|KT345693.1| 1778588 g5501 i0 91.841 89.7953488372093 429 35 99 0 1 429 545 973 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 38612 599 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
9571707 9571707 PRJNA674048_P_NODE_33468_length_157_cov_4.185185_g33265_i0 PRJNA674048 33468 157 4.185185 6.57074045 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 279 5.46e-71   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g33265 i0 98.726 35.9872611464968 157 2 100 0 1 157 140 296 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 5650 279 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
10847100 10847100 PRJNA674048_P_NODE_11189_length_278_cov_2.026201_g10986_i0 PRJNA674048 11189 278 2.026201 5.63283878 Vannella miroides 218656 Discosea other_Eukaryota 442 1.2999999999999995e-119   NTclustered gi|27803574|gb|AY183888.1| 218656 g10986 i0 95.324 93.7661870503597 278 13 100 0 1 278 1929 1652 Vannella miroides small subunit ribosomal RNA gene, complete sequence blastn 26067 442 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella miroides
12122380 12122380 PRJNA674048_P_NODE_20550_length_194_cov_1.793103_g20347_i0 PRJNA674048 20550 194 1.793103 3.47861982 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 235 1.55e-57   NTclustered gi|470398688|ref|XM_004335296.1| 1257118 g20347 i0 89.305 199.824742268041 187 20 96 0 8 194 1 187 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_239270), partial mRNA blastn 38766 235 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12645171 12645171 PRJNA674048_P_NODE_14850_length_233_cov_1.130435_g14647_i0 PRJNA674048 14850 233 1.130435 2.63391355 Vannella simplex 197532 Discosea other_Eukaryota 100 1.32e-22   NR AUO29163.1 197532 g14647 i0 82 0.785407725321888 61 11 78.5 0 49 231 17 77 AUO29163.1 cytochrome oxidase subunit 1 [Vannella simplex] diamond 183 100 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
26669939 26669939 PRJNA674048_P_NODE_22321_length_186_cov_1.518248_g22118_i0 PRJNA674048 22321 186 1.518248 2.82394128 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 5.91e-26   NR XP_004333661.1 1257118 g22118 i0 80.3 0.983870967741935 61 12 98.4 0 185 3 5 65 XP_004333661.1 actin bundling protein [Acanthamoeba castellanii str. Neff] diamond 183 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26796959 26796959 PRJNA674048_P_NODE_34021_length_153_cov_2.576923_g33818_i0 PRJNA674048 34021 153 2.576923 3.94269219 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.2 3.89e-11   NR XP_004338074.1 1257118 g33818 i0 81.8 0.862745098039216 44 8 86.3 0 1 132 191 234 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 132 66.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26955028 26955028 PRJNA674048_P_NODE_29242_length_166_cov_0.888889_g29039_i0 PRJNA674048 29242 166 0.888889 1.47555574 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 8.16e-8   NR XP_004338460.1 1257118 g29039 i0 43.8 0.867469879518072 48 27 86.7 0 3 146 75 122 XP_004338460.1 protozoan/cyanobacterial globin family subfamily protein [Acanthamoeba castellanii str. Neff] diamond 144 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27397988 27397988 PRJNA674048_P_NODE_30083_length_165_cov_0.896552_g29880_i0 PRJNA674048 30083 165 0.896552 1.4793108 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 5.09e-6   NR XP_004347742.1 1257118 g29880 i0 51.2 0.745454545454545 41 20 74.5 0 3 125 260 300 XP_004347742.1 DOCK family protein [Acanthamoeba castellanii str. Neff] diamond 123 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28629414 28629414 PRJNA674048_P_NODE_23567_length_181_cov_1.575758_g23364_i0 PRJNA674048 23567 181 1.575758 2.85212198 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 88.6 5.58e-21   NR XP_004339588.1 1257118 g23364 i0 82.1 2.7182320441989 56 10 92.8 0 168 1 6 61 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 492 88.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30303401 30303401 PRJNA674048_P_NODE_34012_length_153_cov_2.730769_g33809_i0 PRJNA674048 34012 153 2.730769 4.17807657 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.37e-5   NR XP_004337416.1 1257118 g33809 i0 52.4 0.823529411764706 42 20 82.4 0 132 7 1 42 XP_004337416.1 Twinfilin, putative [Acanthamoeba castellanii str. Neff] diamond 126 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31788315 31788315 PRJNA674048_P_NODE_13457_length_247_cov_1.050505_g13254_i0 PRJNA674048 13457 247 1.050505 2.59474735 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 119 3.82e-29   NR XP_004346039.1 1257118 g13254 i0 64.2 0.983805668016194 81 28 98.4 1 3 245 375 454 XP_004346039.1 cathepsin Llike proteinase [Acanthamoeba castellanii str. Neff] diamond 243 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32894185 32894185 PRJNA674048_P_NODE_31680_length_163_cov_0.912281_g31477_i0 PRJNA674048 31680 163 0.912281 1.48701803 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89 2.16e-19   NR XP_004356622.1 1257118 g31477 i0 75.9 0.993865030674847 54 13 99.4 0 163 2 164 217 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 162 89 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;