RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA672101", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA672101 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27366493 27366493 PRJNA672101_S_NODE_21063_length_280_cov_5.135266_g21032_i0 PRJNA672101 21063 280 5.135266 14.3787448 Anaerolineales bacterium 2073117 Bacteria Bacteria 43.5 0.0322   NR HEY4668005.1 2073117 g21032 i0 31.1 0.792857142857143 74 51 79.3 0 25 246 432 505 HEY4668005.1 adenylate/guanylate cyclase domain-containing protein [Anaerolineales bacterium] diamond 222 43.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
30599067 30599067 PRJNA672101_S_NODE_28853_length_250_cov_1.728814_g28822_i0 PRJNA672101 28853 250 1.728814 4.322035 Bacteria 2 Bacteria Bacteria 49.3 1.49e-4   NR PKN83635.1 2013730 g28822 i0 48.1 2.46 52 25 62.4 1 93 248 172 221 PKN83635.1 MAG: 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, partial [Chloroflexi bacterium HGW-Chloroflexi-7] diamond 615 49.3 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium HGW-Chloroflexi-7
32073293 32073293 PRJNA672101_S_NODE_9658_length_351_cov_2.780576_g9627_i0 PRJNA672101 9658 351 2.780576 9.75982176 Anaerolineales bacterium 2073117 Bacteria Bacteria 61.2 4.02e-8   NR HMD81774.1 2073117 g9627 i0 44.8 0.572649572649573 67 36 57.3 1 149 349 347 412 HMD81774.1 hypothetical protein [Anaerolineales bacterium] diamond 201 61.2 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;