RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA672101", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA672101 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26860571 26860571 PRJNA672101_S_NODE_8881_length_358_cov_4.003509_g8850_i0 PRJNA672101 8881 358 4.003509 14.33256222 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 49.7 4.87e-4   NR HEX4067606.1 2052142 g8850 i0 47.9 0.402234636871508 48 25 40.2 0 280 137 55 102 HEX4067606.1 tetratricopeptide repeat protein [Acidobacteriaceae bacterium] diamond 144 49.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
27283384 27283384 PRJNA672101_S_NODE_12403_length_329_cov_4.375000_g12372_i0 PRJNA672101 12403 329 4.375 14.39375 Bacteria 2 Bacteria Bacteria 124 1.23e-32   NR MBI3651923.1 1978231 g12372 i0 73.3 1.3677811550152 75 20 68.4 0 227 3 187 261 MBI3651923.1 class II aldolase/adducin family protein [Acidobacteriota bacterium] diamond 450 124 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28578037 28578037 PRJNA672101_S_NODE_9747_length_350_cov_4.444043_g9716_i0 PRJNA672101 9747 350 4.444043 15.5541505 Pseudomonadati 3379134 Bacteria Bacteria 51.6 9.46e-5   NR MBS1857945.1 1978231 g9716 i0 55.1 0.84 49 22 42 0 147 1 381 429 MBS1857945.1 collagen-like protein [Acidobacteriota bacterium] diamond 294 51.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;