RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA672101", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

  • Metazoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA672101 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11369025 11369025 PRJNA672101_S_NODE_14349_length_316_cov_2.534979_g14318_i0 PRJNA672101 14349 316 2.534979 8.01053364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 147 9.54e-43   NR CDW57740.1 36087 g14318 i0 77.6 6.45569620253165 85 19 80.7 0 315 61 71 155 CDW57740.1 40S ribosomal protein S16 [Trichuris trichiura] diamond 2040 147 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
14670880 14670880 PRJNA672101_S_NODE_20152_length_285_cov_1.089623_g20121_i0 PRJNA672101 20152 285 1.089623 3.10542555 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g20121 i0 100 0.0982456140350877 28 0 10 0 258 285 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
27219881 27219881 PRJNA672101_S_NODE_6302_length_387_cov_4.197452_g6271_i0 PRJNA672101 6302 387 4.197452 16.24413924 Rhabditida 6236 Nematoda Nematoda 53.5 3.05e-5   NR RCN34860.1 29170 g6271 i0 47.7 3.83720930232558 44 23 34.1 0 386 255 243 286 RCN34860.1 hypothetical protein ANCCAN_19303 [Ancylostoma caninum] diamond 1485 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
29651079 29651079 PRJNA672101_S_NODE_26210_length_259_cov_2.623656_g26179_i0 PRJNA672101 26210 259 2.623656 6.79526904 Metazoa 33208 Nematoda Nematoda 43.1 0.0105   NR VDL82278.1 27835 g26179 i0 40.5 1.22779922779923 42 25 48.6 0 132 257 18 59 VDL82278.1 unnamed protein product [Nippostrongylus brasiliensis] diamond 318 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
30492544 30492544 PRJNA672101_S_NODE_9193_length_355_cov_5.251773_g9162_i0 PRJNA672101 9193 355 5.251773 18.64379415 Diploscapter pachys 2018661 Nematoda Nematoda 139 1.78e-36   NR PAV73600.1 2018661 g9162 i0 83.5 0.870422535211268 103 17 87 0 353 45 359 461 PAV73600.1 hypothetical protein WR25_00780 [Diploscapter pachys] diamond 309 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;