RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA672101", tax_kingdom = "Metazoa" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA672101 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28692562 28692562 PRJNA672101_S_NODE_21347_length_279_cov_2.242718_g21316_i0 PRJNA672101 21347 279 2.242718 6.25718322 Ptychodera flava 63121 Hemichordata other_Eukaryota 58.2 2.17e-7   NR XP_070546594.1 63121 g21316 i0 36.1 0.89247311827957 83 51 89.2 1 1 249 378 458 XP_070546594.1 E3 ubiquitin-protein ligase TRIM71-like [Ptychodera flava] diamond 249 58.2 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
32906137 32906137 PRJNA672101_S_NODE_6600_length_383_cov_4.090323_g6569_i0 PRJNA672101 6600 383 4.090323 15.66593709 Metazoa 33208 Hemichordata other_Eukaryota 63.5 9.45e-9   NR XP_002740390.2 10224 g6569 i0 29.7 1.86422976501305 118 82 91.6 1 2 352 604 721 XP_002740390.2 PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Saccoglossus kowalevskii] diamond 714 63.5 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;