RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA672101", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA672101 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15944532 15944532 PRJNA672101_S_NODE_19833_length_286_cov_2.169014_g19802_i0 PRJNA672101 19833 286 2.169014 6.20338004 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 523 4.659999999999998e-144   NTclustered gi|922689899|gb|CP012410.1| 712357 g19802 i0 99.65 5.3041958041958 286 1 100 0 1 286 1160863 1160578 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 1517 523 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
19768632 19768632 PRJNA672101_S_NODE_15256_length_310_cov_7.814346_g15225_i0 PRJNA672101 15256 310 7.814346 24.2244726 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 534 2.3599999999999998e-147   NTclustered gi|922689899|gb|CP012410.1| 712357 g15225 i0 97.742 106.996774193548 310 7 100 0 1 310 52070 51761 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 33169 534 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;