RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA670521" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA670521 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
638240 638240 PRJNA670521_P_NODE_49501_length_297_cov_1.366071_g48756_i0 PRJNA670521 49501 297 1.366071 4.05723087 Nolandella sp. LAK-2012 1260117 Tubulinea other_Eukaryota 161 4.39e-35   NTclustered gi|421976359|gb|JQ519496.1| 1260117 g48756 i0 81.771 5.81481481481481 192 35 65 0 18 209 707 516 Nolandella sp. LAK-2012 elongation factor 2 alpha gene, partial cds blastn 1727 161 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
3188961 3188961 PRJNA670521_P_NODE_2483_length_1108_cov_75.545894_g80_i17 PRJNA670521 2483 1108 75.545894 837.04850552 uncultured Lobosea 282480 Tubulinea other_Eukaryota 333 3.6000000000000004e-86   NTclustered gi|49356809|gb|AY605213.1| 282480 g80 i17 81.604 17.5180505415162 424 58 37 15 694 1108 905 493 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 19410 333 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
5741516 5741516 PRJNA670521_P_NODE_1325_length_1461_cov_112.272334_g80_i9 PRJNA670521 1325 1461 112.272334 1640.29879974 uncultured Lobosea 282480 Tubulinea other_Eukaryota 333 4.78e-86   NTclustered gi|49356809|gb|AY605213.1| 282480 g80 i9 81.604 13.3114305270363 424 58 28 15 1047 1461 905 493 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 19448 333 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
8291549 8291549 PRJNA670521_P_NODE_74607_length_249_cov_0.875000_g73862_i0 PRJNA670521 74607 249 0.875 2.17875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 333 7.189999999999999e-87   NTclustered gi|423291978|gb|JQ519434.1| 5778 g73862 i0 90.763 97.9196787148594 249 23 100 0 1 249 711 463 Vermamoeba vermiformis clone JG10.93_e2 actin gene, partial cds blastn 24382 333 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14667043 14667043 PRJNA670521_P_NODE_1832_length_1276_cov_134.813799_g80_i15 PRJNA670521 1832 1276 134.813799 1720.22407524 uncultured Lobosea 282480 Tubulinea other_Eukaryota 281 1.53e-70   NTclustered gi|49356809|gb|AY605213.1| 282480 g80 i15 85.662 26.3738244514107 272 34 32 4 694 963 905 637 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 33653 281 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
21040519 21040519 PRJNA670521_P_NODE_1017_length_1629_cov_154.129177_g80_i7 PRJNA670521 1017 1629 154.129177 2510.76429333 uncultured Lobosea 282480 Tubulinea other_Eukaryota 281 1.96e-70   NTclustered gi|49356809|gb|AY605213.1| 282480 g80 i7 85.662 20.6617556783303 272 34 25 4 1047 1316 905 637 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 33658 281 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
24864598 24864598 PRJNA670521_P_NODE_90580_length_242_cov_0.911243_g89835_i0 PRJNA670521 90580 242 0.911243 2.20520806 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 4.2399999999999985e-34   NR AAP88974.1 5775 g89835 i0 79.2 0.954545454545455 77 16 95.5 0 7 237 1 77 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 231 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;