RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA670521", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJNA670521 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23591346 23591346 PRJNA670521_P_NODE_91839_length_241_cov_0.916667_g91094_i0 PRJNA670521 91839 241 0.916667 2.20916747 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 178 3.43e-40   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g91094 i0 80.247 261.614107883817 243 42 99 6 1 240 896022 895783 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 63049 178 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
28124043 28124043 PRJNA670521_P_NODE_90945_length_242_cov_0.911243_g90200_i0 PRJNA670521 90945 242 0.911243 2.20520806 Armatimonadota bacterium 2033014 Bacteria Bacteria 41.6 0.0464   NR MER3558380.1 2033014 g90200 i0 42.2 0.557851239669422 45 26 55.8 0 10 144 55 99 MER3558380.1 hypothetical protein [Armatimonadota bacterium] diamond 135 41.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29733962 29733962 PRJNA670521_P_NODE_28570_length_367_cov_1.309524_g27825_i0 PRJNA670521 28570 367 1.309524 4.80595308 Armatimonadota bacterium 2033014 Bacteria Bacteria 69.7 3.54e-11   NR HUT74329.1 2033014 g27825 i0 48.5 0.555858310626703 68 25 55.6 1 139 342 1 58 HUT74329.1 ribose-phosphate pyrophosphokinase [Armatimonadota bacterium] diamond 204 69.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30776920 30776920 PRJNA670521_P_NODE_82174_length_246_cov_0.890173_g81429_i0 PRJNA670521 82174 246 0.890173 2.18982558 Armatimonadota bacterium 2033014 Bacteria Bacteria 139 9.29e-38   NR MBC8104568.1 2033014 g81429 i0 76.5 1.97560975609756 81 19 98.8 0 245 3 5 85 MBC8104568.1 hypothetical protein [Armatimonadota bacterium] diamond 486 139 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30808434 30808434 PRJNA670521_P_NODE_92214_length_241_cov_0.916667_g91469_i0 PRJNA670521 92214 241 0.916667 2.20916747 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 47 7.99e-4   NR MDX2064719.1 2682144 g91469 i0 39.1 0.796680497925311 64 35 78.4 2 193 5 21 81 MDX2064719.1 PEP-CTERM sorting domain-containing protein [Fimbriimonadaceae bacterium] diamond 192 47 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;