RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA670521", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA670521 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3189076 3189076 PRJNA670521_P_NODE_52523_length_290_cov_1.041475_g51778_i0 PRJNA670521 52523 290 1.041475 3.0202775 uncultured delta proteobacterium 34034 Bacteria Bacteria 496 1.03e-135   NTclustered gi|315177290|gb|HQ532530.1| 34034 g51778 i0 97.586 89.9172413793103 290 5 100 2 1 290 62 349 Uncultured delta proteobacterium clone CR011F5 16S ribosomal RNA gene, partial sequence blastn 26076 496 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15941194 15941194 PRJNA670521_P_NODE_85073_length_244_cov_1.350877_g84328_i0 PRJNA670521 85073 244 1.350877 3.29613988 Microvenator 2946507 Bacteria Bacteria 92.8 3.64e-21   NR WP_146957906.1 2600177 g84328 i0 62.8 2.86475409836066 78 28 95.9 1 243 10 49 125 WP_146957906.1 maleylacetoacetate isomerase [Microvenator marinus] diamond 699 93.6 0.991452991452991 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;