RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA670521", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA670521 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8291378 8291378 PRJNA670521_P_NODE_42907_length_315_cov_0.954545_g42162_i0 PRJNA670521 42907 315 0.954545 3.00681675 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 153 5.5199999999999996e-43   NR ETO09954.1 46433 g42162 i0 71.4 1 105 30 100 0 1 315 60 164 ETO09954.1 ornithine carbamoyltransferase family protein [Reticulomyxa filosa] diamond 315 153 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27366460 27366460 PRJNA670521_P_NODE_63703_length_264_cov_2.497382_g62958_i0 PRJNA670521 63703 264 2.497382 6.59308848 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 65.5 4.85e-10   NR ETO05208.1 46433 g62958 i0 41.8 0.897727272727273 79 45 89.8 1 22 258 118 195 ETO05208.1 homospermidine synthase [Reticulomyxa filosa] diamond 237 65.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27871319 27871319 PRJNA670521_P_NODE_84345_length_245_cov_0.895349_g83600_i0 PRJNA670521 84345 245 0.895349 2.19360505 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 81.3 6.6e-16   NR ETO15253.1 46433 g83600 i0 54.1 0.906122448979592 74 34 90.6 0 20 241 70 143 ETO15253.1 hypothetical protein RFI_22113 [Reticulomyxa filosa] diamond 222 81.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29260436 29260436 PRJNA670521_P_NODE_62589_length_267_cov_1.262887_g61844_i0 PRJNA670521 62589 267 1.262887 3.37190829 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 68.6 1.39e-11   NR ETO19354.1 46433 g61844 i0 43 0.966292134831461 86 41 95.5 3 11 265 38 116 ETO19354.1 hypothetical protein RFI_17876 [Reticulomyxa filosa] diamond 258 68.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;