RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA670521", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA670521 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7016678 7016678 PRJNA670521_P_NODE_3386_length_953_cov_1.726136_g2812_i0 PRJNA670521 3386 953 1.726136 16.45007608 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 385 2.0899999999999994e-126   NR CEO96109.1 37360 g2812 i0 61.3 46.0828961175236 323 119 99.8 2 953 3 84 406 CEO96109.1 hypothetical protein PBRA_004799 [Plasmodiophora brassicae] diamond 43917 385 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
9566582 9566582 PRJNA670521_P_NODE_10508_length_553_cov_2.643750_g9775_i0 PRJNA670521 10508 553 2.64375 14.6199375 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 154 3.19e-44   NR SPQ93437.1 37360 g9775 i0 66.4 2.35443037974684 116 38 62.4 1 10 354 32 147 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1302 154 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
12117624 12117624 PRJNA670521_P_NODE_84170_length_245_cov_0.895349_g83425_i0 PRJNA670521 84170 245 0.895349 2.19360505 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 127 6.42e-32   NR SPQ95814.1 37360 g83425 i0 75.3 2.97551020408163 81 20 99.2 0 1 243 929 1009 SPQ95814.1 unnamed protein product [Plasmodiophora brassicae] diamond 729 127 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
17216000 17216000 PRJNA670521_P_NODE_10434_length_555_cov_4.313278_g9701_i0 PRJNA670521 10434 555 4.313278 23.9386929 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 158 6.859999999999999e-46   NR SPQ93437.1 37360 g9701 i0 71.8 2.25405405405405 103 29 55.7 0 21 329 32 134 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1251 159 0.993710691823899 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26986654 26986654 PRJNA670521_P_NODE_74722_length_249_cov_0.875000_g73977_i0 PRJNA670521 74722 249 0.875 2.17875 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 77.8 2.38e-15   NR CEO97816.1 37360 g73977 i0 54.4 1.93975903614458 79 36 95.2 0 8 244 21 99 CEO97816.1 hypothetical protein PBRA_005930 [Plasmodiophora brassicae] diamond 483 77.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32421327 32421327 PRJNA670521_P_NODE_62219_length_268_cov_1.184615_g61474_i0 PRJNA670521 62219 268 1.184615 3.1747682 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 111 1.54e-29   NR CEP02593.1 37360 g61474 i0 67.9 0.940298507462687 84 27 94 0 255 4 11 94 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 252 111 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32496684 32496684 PRJNA670521_P_NODE_48899_length_299_cov_0.840708_g48154_i0 PRJNA670521 48899 299 0.840708 2.51371692 root 1 Root_unresolved Root_unresolved 76.3 1.24e-13   NR SPQ98237.1 37360 g48154 i0 45.6 4.54515050167224 90 49 90.3 0 273 4 87 176 SPQ98237.1 unnamed protein product [Plasmodiophora brassicae] diamond 1359 77 0.990909090909091 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32862756 32862756 PRJNA670521_P_NODE_49160_length_298_cov_1.311111_g48415_i0 PRJNA670521 49160 298 1.311111 3.90711078 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.9 7.48e-10   NR CEO95549.1 37360 g48415 i0 39.5 0.76510067114094 76 43 75.5 2 71 295 99 172 CEO95549.1 hypothetical protein PBRA_004275 [Plasmodiophora brassicae] diamond 228 63.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;