RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA670521", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA670521 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7542749 7542749 PRJNA670521_P_NODE_13546_length_495_cov_3.244076_g12808_i0 PRJNA670521 13546 495 3.244076 16.0581762 Collodictyon 190324 Root_unresolved Root_unresolved 104 1.32e-17   NTclustered gi|1200177725|gb|MF039359.1| 190325 g12808 i0 83.051 3.10707070707071 118 17 24 3 307 423 2271 2386 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1538 104 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
17742826 17742826 PRJNA670521_P_NODE_16774_length_453_cov_3.713158_g16032_i0 PRJNA670521 16774 453 3.713158 16.82060574 Collodictyon 190324 Root_unresolved Root_unresolved 104 1.2e-17   NTclustered gi|1200177725|gb|MF039359.1| 190325 g16032 i0 83.051 3.39514348785872 118 17 26 3 7 123 2271 2386 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1538 104 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;