RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA669701" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA669701 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27050110 27050110 PRJNA669701_P_NODE_106882_length_251_cov_2.544944_g106487_i0 PRJNA669701 106882 251 2.544944 6.38780944 Thermoplasmata archaeon 1906666 Archaea Archaea 45.1 0.00134   NR HID25561.1 1906666 g106487 i0 51.1 0.561752988047809 47 23 56.2 0 2 142 8 54 HID25561.1 50S ribosomal protein P1 [Thermoplasmata archaeon] diamond 141 45.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
29765613 29765613 PRJNA669701_P_NODE_95971_length_263_cov_2.163158_g95576_i0 PRJNA669701 95971 263 2.163158 5.68910554 Thermoplasmatales archaeon 2268204 Archaea Archaea 62 7.77e-9   NR MEM0135853.1 2268204 g95576 i0 64 0.570342205323194 50 15 55.9 2 262 116 548 595 MEM0135853.1 RNase H-like domain-containing protein [Thermoplasmatales archaeon] diamond 150 62 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon
32358205 32358205 PRJNA669701_P_NODE_27059_length_451_cov_14.124339_g26664_i0 PRJNA669701 27059 451 14.124339 63.70076889 Thermoplasmata archaeon 1906666 Archaea Archaea 59.3 5.12e-7   NR RLF29100.1 1906666 g26664 i0 34 2.06208425720621 103 67 68.5 1 55 363 57 158 RLF29100.1 MAG: hypothetical protein DRN05_02420 [Thermoplasmata archaeon] diamond 930 59.3 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
32433449 32433449 PRJNA669701_P_NODE_106319_length_252_cov_1.625698_g105924_i0 PRJNA669701 106319 252 1.625698 4.09675896 root 1 Root_unresolved Root_unresolved 44.7 0.00678   NR MFQ6127443.1 1906666 g105924 i0 43.1 2.47619047619048 58 29 69 2 64 237 61 114 MFQ6127443.1 adenylate kinase [Thermoplasmata archaeon] diamond 624 44.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;