RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA669701" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA669701 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24862502 24862502 PRJNA669701_P_NODE_82940_length_278_cov_2.014634_g82545_i0 PRJNA669701 82940 278 2.014634 5.60068252 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 193 1.45e-44   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g82545 i0 81.974 85.1834532374101 233 37 83 4 1 232 2558056 2558284 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 23681 193 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
29020291 29020291 PRJNA669701_P_NODE_130308_length_244_cov_1.473684_g129913_i0 PRJNA669701 130308 244 1.473684 3.59578896 Pseudomonadati 3379134 Bacteria Bacteria 116 1.29e-28   NR MBE2185767.1 2306054 g129913 i0 74.7 1.93032786885246 79 20 97.1 0 239 3 256 334 MBE2185767.1 TIGR01777 family protein [Rhodothermales bacterium] diamond 471 116 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;