RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA669701" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27776764 27776764 PRJNA669701_P_NODE_50584_length_338_cov_1.883019_g50189_i0 PRJNA669701 50584 338 1.883019 6.36460422 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 84 3.94e-16   NR XP_067779001.1 135588 g50189 i0 52.9 0.603550295857988 68 32 60.4 0 232 29 707 774 XP_067779001.1 coatomer subunit beta'-2-like [Histomonas meleagridis] diamond 204 84 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30681722 30681722 PRJNA669701_P_NODE_66193_length_303_cov_1.713043_g65798_i0 PRJNA669701 66193 303 1.713043 5.19052029 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 77.4 4.8e-15   NR XP_067771402.1 135588 g65798 i0 39.6 2.72277227722772 101 58 97 1 302 9 80 180 XP_067771402.1 small GTP-binding protein [Histomonas meleagridis] diamond 825 77.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;