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contig_metadata

15 rows where bioproject = "PRJNA669701" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA669701 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4463487 4463487 PRJNA669701_P_NODE_20364_length_521_cov_4.066964_g19969_i0 PRJNA669701 20364 521 4.066964 21.18888244 Rotylenchulus reniformis 239373 Nematoda Nematoda 126 2.97e-24   NTclustered gi|758742691|gb|KP054086.1| 239373 g19969 i0 93.103 15.0345489443378 87 5 17 1 1 86 378 464 Rotylenchulus reniformis isolate CQ10 clone 6 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7833 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
9564909 9564909 PRJNA669701_P_NODE_89428_length_271_cov_1.095960_g89033_i0 PRJNA669701 89428 271 1.09596 2.9700516 Caenorhabditis elegans 6239 Nematoda Nematoda 60.2 1.49e-4   NTclustered gi|687866618|emb|LK928722.1| 6239 g89033 i0 100 1.42435424354244 32 0 12 0 238 269 10600 10631 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000367 blastn 386 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17214157 17214157 PRJNA669701_P_NODE_72314_length_291_cov_3.408257_g71919_i0 PRJNA669701 72314 291 3.408257 9.91802787 Oesophagostomum dentatum 61180 Nematoda Nematoda 155 8.94e-46   NR KHJ80785.1 61180 g71919 i0 87.4 12.5567010309278 87 11 89.7 0 2 262 104 190 KHJ80785.1 Enolase, TIM barrel domain protein [Oesophagostomum dentatum] diamond 3654 155 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum
24115730 24115730 PRJNA669701_P_NODE_121559_length_247_cov_0.885057_g121164_i0 PRJNA669701 121559 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.006   NTclustered gi|2082282127|ref|XM_043079447.1| 6279 g121164 i0 100 0.983805668016194 29 0 12 0 183 211 67 39 Brugia malayi uncharacterized protein (Bm148), partial mRNA blastn 243 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
26808908 26808908 PRJNA669701_P_NODE_149001_length_210_cov_4.364964_g148606_i0 PRJNA669701 149001 210 4.364964 9.1664244 Metazoa 33208 Nematoda Nematoda 89 1.24e-18   NR KAI6184565.1 293665 g148606 i0 58 2.97142857142857 69 29 98.6 0 3 209 232 300 KAI6184565.1 Diadenosine tetraphosphate synthetase [Aphelenchoides bicaudatus] diamond 624 89 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
27536104 27536104 PRJNA669701_P_NODE_97763_length_261_cov_2.276596_g97368_i0 PRJNA669701 97763 261 2.276596 5.94191556 Rhabditida 6236 Nematoda Nematoda 59.3 2.55e-8   NR VDK20411.1 6269 g97368 i0 49.1 2.41379310344828 53 27 60.9 0 241 83 120 172 VDK20411.1 unnamed protein product [Anisakis simplex] diamond 630 59.7 0.993299832495812 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
28439742 28439742 PRJNA669701_P_NODE_100386_length_258_cov_3.059459_g99991_i0 PRJNA669701 100386 258 3.059459 7.89340422 Ancylostoma ceylanicum 53326 Nematoda Nematoda 79 3.89e-16   NR EPB80480.1 53326 g99991 i0 48.6 6.81395348837209 74 38 86 0 3 224 72 145 EPB80480.1 acyl CoA binding protein [Ancylostoma ceylanicum] diamond 1758 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
28660770 28660770 PRJNA669701_P_NODE_95387_length_264_cov_1.429319_g94992_i0 PRJNA669701 95387 264 1.429319 3.77340216 Strongyloides ratti 34506 Nematoda Nematoda 71.2 4.43e-12   NR XP_024502292.1 34506 g94992 i0 35.4 1.55681818181818 82 52 92 1 257 15 820 901 XP_024502292.1 Pre-mRNA-processing factor 6 [Strongyloides ratti] diamond 411 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
28912987 28912987 PRJNA669701_P_NODE_113208_length_249_cov_2.750000_g112813_i0 PRJNA669701 113208 249 2.75 6.8475 Steinernema carpocapsae 34508 Nematoda Nematoda 50.4 7.66e-5   NR TMS37762.1 34508 g112813 i0 61.1 0.433734939759036 36 14 43.4 0 239 132 166 201 TMS37762.1 hypothetical protein L596_004629 [Steinernema carpocapsae] diamond 108 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
29670681 29670681 PRJNA669701_P_NODE_25950_length_461_cov_2.492268_g25555_i0 PRJNA669701 25950 461 2.492268 11.48935548 Trichostrongylus colubriformis 6319 Nematoda Nematoda 48.9 0.00253   NR KAK5967598.1 6319 g25555 i0 35.7 0.455531453362256 70 40 43.6 2 394 194 997 1064 KAK5967598.1 hypothetical protein GCK32_005965 [Trichostrongylus colubriformis] diamond 210 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
29828843 29828843 PRJNA669701_P_NODE_148271_length_222_cov_5.402685_g147876_i0 PRJNA669701 148271 222 5.402685 11.9939607 Haemonchus contortus 6289 Nematoda Nematoda 79.3 3.68e-15   NR XGW02009.1 6289 g147876 i0 56.9 4.86486486486486 72 31 97.3 0 7 222 450 521 XGW02009.1 hypothetical protein V3C99_014237 [Haemonchus contortus] diamond 1080 79.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
29986840 29986840 PRJNA669701_P_NODE_106411_length_252_cov_1.446927_g106016_i0 PRJNA669701 106411 252 1.446927 3.64625604 Strongyloides ratti 34506 Nematoda Nematoda 48.1 4.86e-4   NR XP_024509254.1 34506 g106016 i0 31.5 3.61904761904762 73 47 83.3 1 250 41 178 250 XP_024509254.1 Snurportin-1 [Strongyloides ratti] diamond 912 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30049870 30049870 PRJNA669701_P_NODE_145551_length_233_cov_2.862500_g145156_i0 PRJNA669701 145551 233 2.8625 6.669625 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 88.6 1.23e-19   NR CAD6189816.1 2777116 g145156 i0 58 7.10729613733906 69 29 88.8 0 233 27 23 91 CAD6189816.1 unnamed protein product [Caenorhabditis auriculariae] diamond 1656 88.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
31377388 31377388 PRJNA669701_P_NODE_89156_length_271_cov_1.439394_g88761_i0 PRJNA669701 89156 271 1.439394 3.90075774 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 47.4 0.00129   NR KAI6189640.1 293665 g88761 i0 51.2 1.31734317343173 41 20 45.4 0 1 123 393 433 KAI6189640.1 hypothetical protein M3Y97_00030500 [Aphelenchoides bicaudatus] diamond 357 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
32906087 32906087 PRJNA669701_P_NODE_113300_length_249_cov_2.363636_g112905_i0 PRJNA669701 113300 249 2.363636 5.88545364 Metazoa 33208 Nematoda Nematoda 70.5 2.11e-12   NR XP_003372739.1 6334 g112905 i0 45.7 17.566265060241 81 44 97.6 0 2 244 140 220 XP_003372739.1 EF hand domain containing protein [Trichinella spiralis] diamond 4374 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;