RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA669701" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30366363 30366363 PRJNA669701_P_NODE_108952_length_251_cov_0.865169_g108557_i0 PRJNA669701 108952 251 0.865169 2.17157419 Minisyncoccota bacterium 2053589 Bacteria Bacteria 81.3 9.67e-16   NR HEY0964672.1 2053589 g108557 i0 100 0.454183266932271 38 0 45.4 0 1 114 396 433 HEY0964672.1 peptidoglycan DD-metalloendopeptidase family protein [Candidatus Paceibacterota bacterium] diamond 114 81.3 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31123963 31123963 PRJNA669701_P_NODE_80775_length_281_cov_1.365385_g80380_i0 PRJNA669701 80775 281 1.365385 3.83673185 Minisyncoccota bacterium 2053589 Bacteria Bacteria 73.6 4.18e-13   NR MFA6049728.1 2053589 g80380 i0 53.1 0.683274021352313 64 30 68.3 0 224 33 20 83 MFA6049728.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 192 73.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;