RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA669701" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28534574 28534574 PRJNA669701_P_NODE_19247_length_536_cov_3.717063_g18853_i0 PRJNA669701 19247 536 3.717063 19.92345768 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 159 1.91e-45   NR GFH59861.1 426638 g18853 i0 45.7 1.86380597014925 162 85 90.7 2 29 514 58 216 GFH59861.1 ubiquitin-conjugating enzyme E2 M [Chaetoceros tenuissimus] diamond 999 159 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
29134502 29134502 PRJNA669701_P_NODE_141869_length_241_cov_0.916667_g141474_i0 PRJNA669701 141869 241 0.916667 2.20916747 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 69.7 1.45e-12   NR KAI2514212.1 210448 g141474 i0 72.7 6.37344398340249 44 12 54.8 0 132 1 7 50 KAI2514212.1 ribosomal uL5-like protein [Fragilaria crotonensis] diamond 1536 69.7 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
31768753 31768753 PRJNA669701_P_NODE_83777_length_277_cov_2.088235_g83382_i0 PRJNA669701 83777 277 2.088235 5.78441095 root 1 Root_unresolved Root_unresolved 43.9 0.0225   NR KAG7360647.1 303405 g83382 i0 50 1.27797833935018 36 17 37.9 1 50 154 697 732 KAG7360647.1 FTO catalytic domain containing protein [Nitzschia inconspicua] diamond 354 43.9 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;