RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA669701", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA669701 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13917666 13917666 PRJNA669701_P_NODE_101971_length_257_cov_1.244565_g101576_i0 PRJNA669701 101971 257 1.244565 3.19853205 Fervidobacterium 2422 Bacteria Bacteria 466 7.05e-127   NTclustered gi|444439378|ref|NR_074093.1| 2424 g101576 i0 99.228 108.544747081712 259 0 100 1 1 257 334 76 Fervidobacterium nodosum strain Rt17-B1 16S ribosomal RNA, partial sequence blastn 27896 466 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
22841233 22841233 PRJNA669701_P_NODE_113418_length_249_cov_1.750000_g113023_i0 PRJNA669701 113418 249 1.75 4.3575 Fervidobacterium 2422 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|61657861|emb|AJ876542.1| 2424 g113023 i0 99.197 203.95983935743 249 2 100 0 1 249 522 274 Fervidobacterium nodosum partial 23S rRNA gene blastn 50786 449 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
31661697 31661697 PRJNA669701_P_NODE_120777_length_247_cov_0.885057_g120382_i0 PRJNA669701 120777 247 0.885057 2.18609079 Fervidobacterium sp. 1871331 Bacteria Bacteria 133 3.37e-36   NR HPV62857.1 1871331 g120382 i0 91.4 0.850202429149798 70 6 85 0 211 2 1 70 HPV62857.1 P22 phage major capsid protein family protein [Fervidobacterium sp.] diamond 210 133 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;