contig_metadata
12 rows where bioproject = "PRJNA669701", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 635381 | 635381 | PRJNA669701_P_NODE_130301_length_244_cov_1.485380_g129906_i0 | PRJNA669701 | 130301 | 244 | 1.48538 | 3.6243272 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 104 | 5.64e-26 | NR | MCK6499161.1 | 70125 | g129906 | i0 | 66.3 | 2.95081967213115 | 80 | 24 | 98.4 | 1 | 244 | 5 | 35 | 111 | MCK6499161.1 AAA family ATPase [Nitrospira sp.] | diamond | 720 | 104 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 7542048 | 7542048 | PRJNA669701_P_NODE_27806_length_445_cov_2.188172_g27411_i0 | PRJNA669701 | 27806 | 445 | 2.188172 | 9.7373654 | Nitrospira | 1234 | Bacteria | Bacteria | 701 | 0 | NTclustered | gi|2863129529|dbj|AP038806.1| | 70125 | g27411 | i0 | 95.056 | 51.0224719101124 | 445 | 22 | 100 | 0 | 1 | 445 | 3063211 | 3062767 | MAG: Nitrospira sp. NFB02 DNA, complete genome | blastn | 22705 | 706 | 0.992917847025496 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 8288432 | 8288432 | PRJNA669701_P_NODE_123127_length_246_cov_2.283237_g122732_i0 | PRJNA669701 | 123127 | 246 | 2.283237 | 5.61676302 | Nitrospira defluvii | 330214 | Bacteria | Bacteria | 449 | 6.74e-122 | NTclustered | gi|300603458|emb|FP929003.1| | 330214 | g122732 | i0 | 99.593 | 1.36178861788618 | 246 | 1 | 100 | 0 | 1 | 246 | 824498 | 824743 | Candidatus Nitrospira defluvii chromosome, complete genome | blastn | 335 | 449 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira defluvii | ||
| 9563685 | 9563685 | PRJNA669701_P_NODE_127768_length_245_cov_0.895349_g127373_i0 | PRJNA669701 | 127768 | 245 | 0.895349 | 2.19360505 | Nitrospira | 1234 | Bacteria | Bacteria | 165 | 5.79e-48 | NR | MEQ1847728.1 | 70125 | g127373 | i0 | 96.3 | 21.8204081632653 | 81 | 3 | 99.2 | 0 | 245 | 3 | 172 | 252 | MEQ1847728.1 IscS subfamily cysteine desulfurase [Nitrospira sp.] | diamond | 5346 | 165 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 17213023 | 17213023 | PRJNA669701_P_NODE_112814_length_250_cov_0.870056_g112419_i0 | PRJNA669701 | 112814 | 250 | 0.870056 | 2.17514 | Nitrospira japonica | 1325564 | Bacteria | Bacteria | 124 | 4.729999999999999e-24 | NTclustered | gi|1167499077|emb|LT828648.1| | 1325564 | g112419 | i0 | 92.045 | 0.352 | 88 | 7 | 35 | 0 | 155 | 242 | 1413045 | 1412958 | Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I | blastn | 88 | 124 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira japonica | ||
| 22841852 | 22841852 | PRJNA669701_P_NODE_5018_length_1110_cov_3.294118_g4731_i0 | PRJNA669701 | 5018 | 1110 | 3.294118 | 36.5647098 | Nitrospira | 1234 | Bacteria | Bacteria | 1858 | 0 | NTclustered | gi|2863129529|dbj|AP038806.1| | 70125 | g4731 | i0 | 97.019 | 100.500900900901 | 1107 | 29 | 99 | 3 | 1 | 1106 | 3063251 | 3064354 | MAG: Nitrospira sp. NFB02 DNA, complete genome | blastn | 111556 | 1873 | 0.991991457554725 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 27682218 | 27682218 | PRJNA669701_P_NODE_143624_length_239_cov_2.638554_g143229_i0 | PRJNA669701 | 143624 | 239 | 2.638554 | 6.30614406 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 51.6 | 7.09e-6 | NR | HRC43098.1 | 70125 | g143229 | i0 | 40 | 0.878661087866109 | 70 | 42 | 87.9 | 0 | 211 | 2 | 66 | 135 | HRC43098.1 tetratricopeptide repeat protein [Nitrospira sp.] | diamond | 210 | 51.6 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 28029309 | 28029309 | PRJNA669701_P_NODE_128045_length_245_cov_0.895349_g127650_i0 | PRJNA669701 | 128045 | 245 | 0.895349 | 2.19360505 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 136 | 4.68e-37 | NR | HEU4504162.1 | 70125 | g127650 | i0 | 98.6 | 0.869387755102041 | 71 | 1 | 86.9 | 0 | 244 | 32 | 264 | 334 | HEU4504162.1 catalase family peroxidase [Nitrospira sp.] | diamond | 213 | 136 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31061322 | 31061322 | PRJNA669701_P_NODE_133455_length_243_cov_1.811765_g133060_i0 | PRJNA669701 | 133455 | 243 | 1.811765 | 4.40258895 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 78.6 | 2.91e-16 | NR | HRC44879.1 | 70125 | g133060 | i0 | 60.6 | 1.55555555555556 | 66 | 25 | 80.2 | 1 | 204 | 10 | 5 | 70 | HRC44879.1 MauE/DoxX family redox-associated membrane protein [Nitrospira sp.] | diamond | 378 | 78.6 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31567243 | 31567243 | PRJNA669701_P_NODE_81896_length_279_cov_3.757282_g81501_i0 | PRJNA669701 | 81896 | 279 | 3.757282 | 10.48281678 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 75.1 | 3.32e-14 | NR | TKB71202.1 | 70125 | g81501 | i0 | 46.8 | 1.94623655913978 | 94 | 48 | 98.9 | 1 | 278 | 3 | 82 | 175 | TKB71202.1 MAG: hypothetical protein E8D46_17700 [Nitrospira sp.] | diamond | 543 | 75.1 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31725078 | 31725078 | PRJNA669701_P_NODE_76297_length_286_cov_2.497653_g75902_i0 | PRJNA669701 | 76297 | 286 | 2.497653 | 7.14328758 | Nitrospira sp. KM1 | 1936990 | Bacteria | Bacteria | 50.1 | 1.72e-4 | NR | WP_173045152.1 | 1936990 | g75902 | i0 | 30 | 1.04895104895105 | 100 | 64 | 99.7 | 3 | 1 | 285 | 22 | 120 | WP_173045152.1 hypothetical protein [Nitrospira sp. KM1] | diamond | 300 | 50.1 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. KM1 | ||
| 32136560 | 32136560 | PRJNA669701_P_NODE_95278_length_264_cov_1.612565_g94883_i0 | PRJNA669701 | 95278 | 264 | 1.612565 | 4.2571716 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 172 | 9.37e-51 | NR | HEU4505238.1 | 70125 | g94883 | i0 | 97.7 | 1 | 88 | 2 | 100 | 0 | 1 | 264 | 15 | 102 | HEU4505238.1 outer membrane beta-barrel protein [Nitrospira sp.] | diamond | 264 | 172 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;