RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA669701", tax_kingdom = "Orthornavirae" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA669701 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3186441 3186441 PRJNA669701_P_NODE_18183_length_552_cov_482.764092_g17790_i0 PRJNA669701 18183 552 482.764092 2664.85778784 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 6.78e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g17790 i0 100 2.80615942028985 71 0 24 0 480 550 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1549 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
4463382 4463382 PRJNA669701_P_NODE_146684_length_230_cov_2.146497_g146289_i0 PRJNA669701 146684 230 2.146497 4.9369431 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 111 3.34e-20   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g146289 i0 95.775 1.1695652173913 71 0 50 3 136 203 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 269 111 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
4463419 4463419 PRJNA669701_P_NODE_148544_length_217_cov_947.069444_g148149_i0 PRJNA669701 148544 217 947.069444 2055.14069348 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 126 1.11e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g148149 i0 100 3.38248847926267 68 0 31 0 150 217 71 4 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 734 126 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
9563922 9563922 PRJNA669701_P_NODE_144428_length_236_cov_1279.877301_g144033_i0 PRJNA669701 144428 236 1279.877301 3020.51043036 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 2.64e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g144033 i0 100 18.978813559322 71 0 46 0 41 111 1 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 4479 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
10840122 10840122 PRJNA669701_P_NODE_61509_length_311_cov_1956.827731_g61114_i0 PRJNA669701 61509 311 1956.827731 6085.73424341 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 3.63e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g61114 i0 100 3.71704180064309 71 0 58 0 41 111 1 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1156 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
24862115 24862115 PRJNA669701_P_NODE_53100_length_331_cov_6144.767442_g52705_i0 PRJNA669701 53100 331 6144.767442 20339.18023302 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 3.89e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g52705 i0 100 3.02416918429003 71 0 44 0 221 291 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1001 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;