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contig_metadata

12 rows where bioproject = "PRJNA669701", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA669701 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1911879 1911879 PRJNA669701_P_NODE_36722_length_389_cov_2.702532_g36327_i0 PRJNA669701 36722 389 2.702532 10.51284948 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 287 9.36e-73   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g36327 i0 79.949 66.2082262210797 389 78 100 0 1 389 66 454 Pythium splendens calmodulin mRNA, complete cds blastn 25755 287 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
3715413 3715413 PRJNA669701_P_NODE_103983_length_254_cov_3.027624_g103588_i0 PRJNA669701 103983 254 3.027624 7.69016496 root 1 Root_unresolved Root_unresolved 470 5.37e-128   NTclustered gi|354801984|gb|JN113287.1| 4787 g103588 i0 100 100 254 0 100 0 1 254 6326 6073 Phytophthora infestans transgenic clone Cu24_cyc_6_R1 retrotransposon gypsy-like, complete sequence; hygromycin phosphotransferase gene, complete cds; and retrotransposons gypsy-like, complete sequence blastn 25400 470 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
7013871 7013871 PRJNA669701_P_NODE_133606_length_243_cov_1.670588_g133211_i0 PRJNA669701 133606 243 1.670588 4.05952884 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 141 1.27e-38   NR DAZ97811.1 4803 g133211 i0 78.8 10.8641975308642 80 17 98.8 0 243 4 271 350 DAZ97811.1 TPA: hypothetical protein N0F65_002481 [Lagenidium giganteum] diamond 2640 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
14665251 14665251 PRJNA669701_P_NODE_80912_length_281_cov_1.134615_g80517_i0 PRJNA669701 80912 281 1.134615 3.18826815 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 154 6.9e-33   NTclustered gi|673024575|ref|XM_008868027.1| 157072 g80517 i0 85.235 44.0818505338078 149 22 53 0 2 150 2257 2405 Aphanomyces invadans tubulin beta chain mRNA blastn 12387 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22313423 22313423 PRJNA669701_P_NODE_66558_length_302_cov_4.484716_g66163_i0 PRJNA669701 66558 302 4.484716 13.54384232 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 276 1.53e-69   NTclustered gi|695460914|ref|XM_009539807.1| 67593 g66163 i0 85.824 86.9635761589404 261 35 86 2 35 294 358 99 Phytophthora sojae hypothetical protein mRNA blastn 26263 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23588794 23588794 PRJNA669701_P_NODE_56679_length_322_cov_2.365462_g56284_i0 PRJNA669701 56679 322 2.365462 7.61678764 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 173 1.2399999999999998e-47   NR XP_008610586.1 1156394 g56284 i0 76.6 2.99068322981366 107 25 99.7 0 2 322 5 111 XP_008610586.1 hypothetical protein SDRG_06578 [Saprolegnia diclina VS20] diamond 963 173 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
26765168 26765168 PRJNA669701_P_NODE_95461_length_264_cov_1.287958_g95066_i0 PRJNA669701 95461 264 1.287958 3.40020912 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.08e-5   NR CCI46784.1 65357 g95066 i0 40.7 1.22727272727273 54 32 61.4 0 68 229 87 140 CCI46784.1 unnamed protein product [Albugo candida] diamond 324 51.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
29481269 29481269 PRJNA669701_P_NODE_53150_length_331_cov_2.631783_g52755_i0 PRJNA669701 53150 331 2.631783 8.71120173 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.16e-10   NR XP_009834982.1 112090 g52755 i0 37.2 2.58308157099698 86 46 70.7 3 3 236 365 450 XP_009834982.1 hypothetical protein H257_10209 [Aphanomyces astaci] diamond 855 68.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
29714255 29714255 PRJNA669701_P_NODE_75350_length_287_cov_3.546729_g74955_i0 PRJNA669701 75350 287 3.546729 10.17911223 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 123 3.23e-30   NR KAJ0412157.1 114742 g74955 i0 67.5 15.3031358885017 83 26 86.8 1 285 37 621 702 KAJ0412157.1 hypothetical protein ATCC90586_005770 [Pythium insidiosum] diamond 4392 123 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30883503 30883503 PRJNA669701_P_NODE_88294_length_272_cov_1.537688_g87899_i0 PRJNA669701 88294 272 1.537688 4.18251136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 140 2.94e-41   NR CCI45708.1 65357 g87899 i0 75 7.45588235294118 88 22 97.1 0 270 7 1 88 CCI45708.1 unnamed protein product [Albugo candida] diamond 2028 141 0.99290780141844 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31389400 31389400 PRJNA669701_P_NODE_18556_length_547_cov_2.251055_g18163_i0 PRJNA669701 18556 547 2.251055 12.31327085 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 58.2 2.98e-6   NR XP_067814297.1 4779 g18163 i0 28.3 3.21389396709324 145 88 70.7 4 489 103 277 421 XP_067814297.1 uncharacterized protein CCR75_002132 [Bremia lactucae] diamond 1758 58.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
31958534 31958534 PRJNA669701_P_NODE_134177_length_243_cov_0.905882_g133782_i0 PRJNA669701 134177 243 0.905882 2.20129326 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89 1.92e-18   NR XP_024578065.1 4781 g133782 i0 62.3 25.5555555555556 77 14 95.1 1 3 233 490 551 XP_024578065.1 heat shock protein 90 [Plasmopara halstedii] diamond 6210 89 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;