RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA669701", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3715577 3715577 PRJNA669701_P_NODE_133223_length_243_cov_2.647059_g132828_i0 PRJNA669701 133223 243 2.647059 6.43235337 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 171 5.8e-38   NTclustered gi|643022|emb|X78521.1| 35210 g132828 i0 95.327 10.0740740740741 107 5 44 0 137 243 2855 2749 R.elatiana complete gene of large subunit rRNA blastn 2448 171 1 Eukaryota Sar   Foraminifera   Rotaliida Rotaliidae Rotaliella Rotaliella elatiana
4463655 4463655 PRJNA669701_P_NODE_37704_length_385_cov_0.987179_g37309_i0 PRJNA669701 37704 385 0.987179 3.80063915 Rotaliella elatiana 35210 SAR_Eukaryotes SAR_Eukaryotes 163 1.6299999999999998e-35   NTclustered gi|643022|emb|X78521.1| 35210 g37309 i0 85.976 7.45194805194805 164 10 39 8 116 267 1818 1980 R.elatiana complete gene of large subunit rRNA blastn 2869 163 1 Eukaryota Sar   Foraminifera   Rotaliida Rotaliidae Rotaliella Rotaliella elatiana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;