RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA669701", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA669701 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27093607 27093607 PRJNA669701_P_NODE_99002_length_260_cov_1.545455_g98607_i0 PRJNA669701 99002 260 1.545455 4.018183 Pseudomonadati 3379134 Bacteria Bacteria 101 9.47e-26   NR HIE43497.1 2035772 g98607 i0 51.2 2.93076923076923 84 41 96.9 0 252 1 20 103 HIE43497.1 beta-ketoacyl-[acyl-carrier-protein] synthase II [Candidatus Omnitrophota bacterium] diamond 762 102 0.990196078431373 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29639102 29639102 PRJNA669701_P_NODE_113430_length_249_cov_1.750000_g113035_i0 PRJNA669701 113430 249 1.75 4.3575 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 83.6 4.32e-17   NR MFC1807526.1 2035772 g113035 i0 55.3 1.83132530120482 76 34 91.6 0 15 242 23 98 MFC1807526.1 SDR family NAD(P)-dependent oxidoreductase [Candidatus Omnitrophota bacterium] diamond 456 83.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32516361 32516361 PRJNA669701_P_NODE_141039_length_241_cov_0.916667_g140644_i0 PRJNA669701 141039 241 0.916667 2.20916747 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 112 2.25e-28   NR MEI7752643.1 2035772 g140644 i0 68.1 8.21576763485477 72 23 89.6 0 217 2 34 105 MEI7752643.1 UDP-glucose 4-epimerase GalE [Candidatus Omnitrophota bacterium] diamond 1980 112 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;