RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA669701", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA669701 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1912460 1912460 PRJNA669701_P_NODE_81562_length_280_cov_1.439614_g81167_i0 PRJNA669701 81562 280 1.439614 4.0309192 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 120 3.13e-29   NR XP_004352908.1 1257118 g81167 i0 67 0.975 91 30 97.5 0 278 6 524 614 XP_004352908.1 glycine-tRNA ligase [Acanthamoeba castellanii str. Neff] diamond 273 120 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12115612 12115612 PRJNA669701_P_NODE_85530_length_275_cov_2.019802_g85135_i0 PRJNA669701 85530 275 2.019802 5.5544555 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 196 1.1e-45   NTclustered gi|300078498|gb|GU001160.1| 5755 g85135 i0 80.783 1.02181818181818 281 28 100 19 1 275 5656 5916 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 281 196 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17214250 17214250 PRJNA669701_P_NODE_79614_length_282_cov_2.004785_g79219_i0 PRJNA669701 79614 282 2.004785 5.6534937 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 148 1.84e-43   NR XP_004341446.1 1257118 g79219 i0 87.2 3.65957446808511 86 11 91.5 0 259 2 61 146 XP_004341446.1 core histone h2a/h2b/h3/h4 superfamily protein [Acanthamoeba castellanii str. Neff] diamond 1032 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23588216 23588216 PRJNA669701_P_NODE_143359_length_240_cov_2.371257_g142964_i0 PRJNA669701 143359 240 2.371257 5.6910168 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 324 4.14e-84   NTclustered gi|470501180|ref|XM_004347076.1| 1257118 g142964 i0 93.548 0.904166666666667 217 14 90 0 1 217 1145 1361 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_384800), partial mRNA blastn 217 324 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28786789 28786789 PRJNA669701_P_NODE_78067_length_284_cov_1.824645_g77672_i0 PRJNA669701 78067 284 1.824645 5.1819918 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52 3.31e-5   NR XP_004340692.1 1257118 g77672 i0 37 0.855633802816901 81 47 85.6 1 11 253 434 510 XP_004340692.1 cupin superfamily subfamily protein [Acanthamoeba castellanii str. Neff] diamond 243 52 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29430222 29430222 PRJNA669701_P_NODE_88389_length_272_cov_1.371859_g87994_i0 PRJNA669701 88389 272 1.371859 3.73145648 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 64.3 1.37e-9   NR XP_004344037.1 1257118 g87994 i0 78.4 0.827205882352941 37 8 40.8 0 271 161 1004 1040 XP_004344037.1 SNF2 family Nterminal domain containing protein, partial [Acanthamoeba castellanii str. Neff] diamond 225 64.7 0.993817619783617 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31408923 31408923 PRJNA669701_P_NODE_136956_length_242_cov_1.674556_g136561_i0 PRJNA669701 136956 242 1.674556 4.05242552 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 0.0016   NR XP_004338353.1 1257118 g136561 i0 45 0.495867768595041 40 22 49.6 0 120 239 31 70 XP_004338353.1 PAS domain Sbox domain containing protein [Acanthamoeba castellanii str. Neff] diamond 120 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;