RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA669701" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 26 ✖

bioproject 1

  • PRJNA669701 · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1912460 1912460 PRJNA669701_P_NODE_81562_length_280_cov_1.439614_g81167_i0 PRJNA669701 81562 280 1.439614 4.0309192 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 120 3.13e-29   NR XP_004352908.1 1257118 g81167 i0 67 0.975 91 30 97.5 0 278 6 524 614 XP_004352908.1 glycine-tRNA ligase [Acanthamoeba castellanii str. Neff] diamond 273 120 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6268406 6268406 PRJNA669701_P_NODE_62025_length_310_cov_4.759494_g61630_i0 PRJNA669701 62025 310 4.759494 14.7544314 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 74.7 8.84e-14   NR KAH3732678.1 1580589 g61630 i0 68.8 0.929032258064516 48 14 46.5 1 310 167 70 116 KAH3732678.1 small GTP binding protein RAB8 [Pelomyxa schiedti] diamond 288 74.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
12115612 12115612 PRJNA669701_P_NODE_85530_length_275_cov_2.019802_g85135_i0 PRJNA669701 85530 275 2.019802 5.5544555 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 196 1.1e-45   NTclustered gi|300078498|gb|GU001160.1| 5755 g85135 i0 80.783 1.02181818181818 281 28 100 19 1 275 5656 5916 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 281 196 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17214250 17214250 PRJNA669701_P_NODE_79614_length_282_cov_2.004785_g79219_i0 PRJNA669701 79614 282 2.004785 5.6534937 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 148 1.84e-43   NR XP_004341446.1 1257118 g79219 i0 87.2 3.65957446808511 86 11 91.5 0 259 2 61 146 XP_004341446.1 core histone h2a/h2b/h3/h4 superfamily protein [Acanthamoeba castellanii str. Neff] diamond 1032 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23588216 23588216 PRJNA669701_P_NODE_143359_length_240_cov_2.371257_g142964_i0 PRJNA669701 143359 240 2.371257 5.6910168 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 324 4.14e-84   NTclustered gi|470501180|ref|XM_004347076.1| 1257118 g142964 i0 93.548 0.904166666666667 217 14 90 0 1 217 1145 1361 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_384800), partial mRNA blastn 217 324 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23589094 23589094 PRJNA669701_P_NODE_80239_length_281_cov_4.687500_g79844_i0 PRJNA669701 80239 281 4.6875 13.171875 Dictyostelium discoideum 44689 Evosea other_Eukaryota 198 3.14e-46   NTclustered gi|66803966|ref|XM_630705.1| 352472 g79844 i0 79.787 5.96085409252669 282 49 99 7 3 280 305 28 Dictyostelium discoideum AX4 S60 ribosomal protein L23 (rpl23) mRNA, complete cds blastn 1675 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
26606565 26606565 PRJNA669701_P_NODE_101241_length_257_cov_3.358696_g100846_i0 PRJNA669701 101241 257 3.358696 8.63184872 Cavenderia fasciculata 261658 Evosea other_Eukaryota 46.2 0.00264   NR XP_004359215.1 261658 g100846 i0 34.7 0.875486381322957 75 42 87.5 1 244 20 567 634 XP_004359215.1 uncharacterized protein DFA_01246 [Cavenderia fasciculata] diamond 225 46.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
26935411 26935411 PRJNA669701_P_NODE_88922_length_271_cov_1.944444_g88527_i0 PRJNA669701 88922 271 1.944444 5.26944324 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 98.6 6.05e-22   NR GAT95282.1 5759 g88527 i0 60.6 6.48708487084871 66 26 73.1 0 18 215 44 109 GAT95282.1 L-myo-inositol 1 phosphate synthase putative [Entamoeba histolytica] diamond 1758 98.6 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
26998590 26998590 PRJNA669701_P_NODE_88442_length_272_cov_1.281407_g88047_i0 PRJNA669701 88442 272 1.281407 3.48542704 Evosea 2605435 Evosea other_Eukaryota 58.5 1.15e-7   NR XP_641862.1 352472 g88047 i0 68.6 2.34926470588235 51 15 55.1 1 270 121 241 291 XP_641862.1 actin bundling protein [Dictyostelium discoideum AX4] diamond 639 58.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27207838 27207838 PRJNA669701_P_NODE_43282_length_361_cov_5.621528_g42887_i0 PRJNA669701 43282 361 5.621528 20.29371608 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 47.8 0.00253   NR XP_004256513.1 370355 g42887 i0 38.6 0.689750692520776 83 39 59 1 352 140 488 570 XP_004256513.1 serine-threonine protein kinase, putative [Entamoeba invadens IP1] diamond 249 47.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
27366399 27366399 PRJNA669701_P_NODE_69543_length_296_cov_2.488789_g69148_i0 PRJNA669701 69543 296 2.488789 7.36681544 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 106 2.31e-25   NR KAH3722847.1 1580589 g69148 i0 54.6 0.983108108108108 97 43 97.3 1 5 292 216 312 KAH3722847.1 thioredoxin 1 [Pelomyxa schiedti] diamond 291 106 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28767322 28767322 PRJNA669701_P_NODE_77167_length_285_cov_2.033019_g76772_i0 PRJNA669701 77167 285 2.033019 5.79410415 Eumycetozoa 142796 Evosea other_Eukaryota 61.6 1.4e-8   NR XP_004358747.1 261658 g76772 i0 42.3 1.97894736842105 97 52 98.9 2 284 3 709 804 XP_004358747.1 vinculin A [Cavenderia fasciculata] diamond 564 62 0.993548387096774 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28786789 28786789 PRJNA669701_P_NODE_78067_length_284_cov_1.824645_g77672_i0 PRJNA669701 78067 284 1.824645 5.1819918 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52 3.31e-5   NR XP_004340692.1 1257118 g77672 i0 37 0.855633802816901 81 47 85.6 1 11 253 434 510 XP_004340692.1 cupin superfamily subfamily protein [Acanthamoeba castellanii str. Neff] diamond 243 52 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29134527 29134527 PRJNA669701_P_NODE_81869_length_279_cov_8.519417_g81474_i0 PRJNA669701 81869 279 8.519417 23.76917343 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 102 5.3399999999999996e-24   NR KAH3722847.1 1580589 g81474 i0 55.6 0.967741935483871 90 39 95.7 1 12 278 220 309 KAH3722847.1 thioredoxin 1 [Pelomyxa schiedti] diamond 270 102 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29430222 29430222 PRJNA669701_P_NODE_88389_length_272_cov_1.371859_g87994_i0 PRJNA669701 88389 272 1.371859 3.73145648 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 64.3 1.37e-9   NR XP_004344037.1 1257118 g87994 i0 78.4 0.827205882352941 37 8 40.8 0 271 161 1004 1040 XP_004344037.1 SNF2 family Nterminal domain containing protein, partial [Acanthamoeba castellanii str. Neff] diamond 225 64.7 0.993817619783617 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29765571 29765571 PRJNA669701_P_NODE_109451_length_251_cov_0.865169_g109056_i0 PRJNA669701 109451 251 0.865169 2.17157419 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 80.9 3.51e-16   NR KAH3745520.1 1580589 g109056 i0 46.4 0.824701195219124 69 37 82.5 0 7 213 112 180 KAH3745520.1 cyclin, N-terminal domain protein [Pelomyxa schiedti] diamond 207 80.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29935825 29935825 PRJNA669701_P_NODE_111551_length_250_cov_0.870056_g111156_i0 PRJNA669701 111551 250 0.870056 2.17514 Evosea 2605435 Evosea other_Eukaryota 68.9 1.09e-11   NR XP_646621.1 352472 g111156 i0 43.8 1.644 73 40 87.6 1 2 220 83 154 XP_646621.1 galactose-binding domain-containing protein [Dictyostelium discoideum AX4] diamond 411 69.3 0.994227994227994 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
30207747 30207747 PRJNA669701_P_NODE_94452_length_265_cov_1.505208_g94057_i0 PRJNA669701 94452 265 1.505208 3.9888012 Cavenderia fasciculata 261658 Evosea other_Eukaryota 75.9 1.05e-13   NR XP_004353867.1 261658 g94057 i0 46.7 1.0188679245283 90 44 99.6 3 265 2 344 431 XP_004353867.1 uncharacterized protein DFA_12230 [Cavenderia fasciculata] diamond 270 75.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
30618662 30618662 PRJNA669701_P_NODE_140153_length_241_cov_1.857143_g139758_i0 PRJNA669701 140153 241 1.857143 4.47571463 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 77 2.19e-14   NR XP_001134515.1 352472 g139758 i0 48.8 1.0207468879668 82 38 98.3 2 238 2 270 350 XP_001134515.1 hypothetical protein DDB_G0289327 [Dictyostelium discoideum AX4] diamond 246 77 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
30934816 30934816 PRJNA669701_P_NODE_49914_length_340_cov_1.494382_g49519_i0 PRJNA669701 49914 340 1.494382 5.0808988 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 159 7.4e-45   NR PRP84373.1 1890364 g49519 i0 70.5 0.988235294117647 112 26 98.8 2 339 4 96 200 PRP84373.1 hypothetical protein PROFUN_08238 [Planoprotostelium fungivorum] diamond 336 159 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30966481 30966481 PRJNA669701_P_NODE_148794_length_213_cov_5.485714_g148399_i0 PRJNA669701 148794 213 5.485714 11.68457082 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 49.7 9.32e-5   NR KYQ88811.1 361077 g148399 i0 42.6 0.859154929577465 61 35 85.9 0 10 192 304 364 KYQ88811.1 HesA/moeB/thiF family protein [Tieghemostelium lacteum] diamond 183 49.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
31123921 31123921 PRJNA669701_P_NODE_116895_length_248_cov_1.497143_g116500_i0 PRJNA669701 116895 248 1.497143 3.71291464 Polysphondylium violaceum 133409 Evosea other_Eukaryota 79.3 5.13e-15   NR KAF2070067.1 133409 g116500 i0 50 0.991935483870968 82 36 99.2 2 246 1 403 479 KAF2070067.1 hypothetical protein CYY_008613 [Polysphondylium violaceum] diamond 246 79.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31408923 31408923 PRJNA669701_P_NODE_136956_length_242_cov_1.674556_g136561_i0 PRJNA669701 136956 242 1.674556 4.05242552 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 0.0016   NR XP_004338353.1 1257118 g136561 i0 45 0.495867768595041 40 22 49.6 0 120 239 31 70 XP_004338353.1 PAS domain Sbox domain containing protein [Acanthamoeba castellanii str. Neff] diamond 120 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32263288 32263288 PRJNA669701_P_NODE_85638_length_275_cov_1.648515_g85243_i0 PRJNA669701 85638 275 1.648515 4.53341625 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 144 1.0199999999999998e-37   NR XP_012758221.1 1410327 g85243 i0 80.2 3.97090909090909 91 18 99.3 0 273 1 607 697 XP_012758221.1 hypothetical protein SAMD00019534_008000 [Acytostelium subglobosum LB1] diamond 1092 144 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
32326691 32326691 PRJNA669701_P_NODE_80559_length_281_cov_1.490385_g80164_i0 PRJNA669701 80559 281 1.490385 4.18798185 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 51.2 6e-5   NR PRP87193.1 1890364 g80164 i0 31.6 1.04626334519573 98 54 97.2 2 3 275 444 535 PRP87193.1 hypothetical protein PROFUN_01455 [Planoprotostelium fungivorum] diamond 294 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32528360 32528360 PRJNA669701_P_NODE_92319_length_267_cov_2.025773_g91924_i0 PRJNA669701 92319 267 2.025773 5.40881391 Eumycetozoa 142796 Evosea other_Eukaryota 128 3.33e-32   NR KAF2076154.1 133409 g91924 i0 69.3 3.95505617977528 88 27 98.9 0 265 2 706 793 KAF2076154.1 hypothetical protein CYY_002561 [Polysphondylium violaceum] diamond 1056 129 0.992248062015504 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;