RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA667863" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA667863 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22311295 22311295 PRJNA667863_P_NODE_17038_length_241_cov_0.916667_g17004_i0 PRJNA667863 17038 241 0.916667 2.20916747 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 274 4.2499999999999997e-69   NTclustered gi|2874253755|emb|OY969695.1| 412054 g17004 i0 89.091 91.344398340249 220 24 91 0 19 238 120800 120581 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 22014 274 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26669785 26669785 PRJNA667863_P_NODE_81_length_1312_cov_12.012107_g67_i0 PRJNA667863 81 1312 12.012107 157.59884384 Longimicrobium sp. 2029185 Bacteria Bacteria 97.4 8.1e-19   NR HEX2210215.1 2029185 g67 i0 47.4 0.553353658536585 114 59 25.8 1 572 910 135 248 HEX2210215.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 726 97.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27682192 27682192 PRJNA667863_P_NODE_10824_length_253_cov_1.588889_g10790_i0 PRJNA667863 10824 253 1.588889 4.01988917 Longimicrobium sp. 2029185 Bacteria Bacteria 61.6 6.29e-9   NR HLM68159.1 2029185 g10790 i0 66.7 2.88142292490119 48 16 56.9 0 16 159 204 251 HLM68159.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 729 61.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29071288 29071288 PRJNA667863_P_NODE_8468_length_267_cov_2.030928_g8434_i0 PRJNA667863 8468 267 2.030928 5.42257776 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 69.7 1.07e-11   NR HEX7243755.1 3047548 g8434 i0 53.4 0.98876404494382 88 39 98.9 2 265 2 201 286 HEX7243755.1 DUF2382 domain-containing protein [Longimicrobiaceae bacterium] diamond 264 69.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29146640 29146640 PRJNA667863_P_NODE_149_length_1088_cov_11.231527_g130_i0 PRJNA667863 149 1088 11.231527 122.19901376 Gemmatimonadota 142182 Bacteria Bacteria 86.3 3.37e-15   NR HEX6372403.1 2029185 g130 i0 42.7 1.48621323529412 131 74 35.8 1 331 720 135 265 HEX6372403.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 1617 86.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29197543 29197543 PRJNA667863_P_NODE_13989_length_246_cov_0.890173_g13955_i0 PRJNA667863 13989 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 53.9 4.36e-6   NR MDZ7778805.1 2026742 g13955 i0 41.9 1.3780487804878 62 36 75.6 0 27 212 16 77 MDZ7778805.1 ankyrin repeat domain-containing protein [Gemmatimonadota bacterium] diamond 339 53.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29670649 29670649 PRJNA667863_P_NODE_9170_length_262_cov_5.767196_g9136_i0 PRJNA667863 9170 262 5.767196 15.11005352 Longimicrobium sp. 2029185 Bacteria Bacteria 69.3 1.01e-11   NR HEX2078858.1 2029185 g9136 i0 52.1 1.5 71 33 80.2 1 52 261 137 207 HEX2078858.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 393 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30997964 30997964 PRJNA667863_P_NODE_74_length_1353_cov_14.375781_g60_i0 PRJNA667863 74 1353 14.375781 194.50431693 Longimicrobium sp. 2029185 Bacteria Bacteria 95.1 5.84e-18   NR HEX6372403.1 2029185 g60 i0 45 0.580931263858093 131 71 28.8 1 813 424 135 265 HEX6372403.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 786 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32021937 32021937 PRJNA667863_P_NODE_518_length_663_cov_9.645763_g486_i0 PRJNA667863 518 663 9.645763 63.95140869 Gemmatirosa 1706036 Bacteria Bacteria 48.5 0.00906   NR HKH91170.1 2026741 g486 i0 63.4 0.959276018099548 41 15 18.6 0 3 125 267 307 HKH91170.1 DUF2382 domain-containing protein [Gemmatimonadaceae bacterium] diamond 636 48.9 0.991820040899796 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;