contig_metadata
12 rows where bioproject = "PRJNA667863", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8816584 | 8816584 | PRJNA667863_P_NODE_6987_length_278_cov_2.707317_g6953_i0 | PRJNA667863 | 6987 | 278 | 2.707317 | 7.52634126 | Bdellovibrio | 958 | Bacteria | Bacteria | 268 | 2.3299999999999994e-67 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g6953 | i0 | 88.688 | 57.2374100719424 | 221 | 23 | 79 | 2 | 26 | 246 | 816662 | 816444 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 15912 | 268 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 9562541 | 9562541 | PRJNA667863_P_NODE_7668_length_273_cov_1.460000_g7634_i0 | PRJNA667863 | 7668 | 273 | 1.46 | 3.9858 | Oligoflexus sp. | 1971216 | Bacteria | Bacteria | 70.9 | 6.7e-13 | NR | WP_324954760.1 | 1971216 | g7634 | i0 | 55.2 | 0.637362637362637 | 58 | 25 | 62.6 | 1 | 1 | 171 | 20 | 77 | WP_324954760.1 hypothetical protein [Oligoflexus sp.] | diamond | 174 | 70.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | Oligoflexaceae | Oligoflexus | Oligoflexus sp. | ||
| 12642741 | 12642741 | PRJNA667863_P_NODE_18650_length_226_cov_2.751634_g18616_i0 | PRJNA667863 | 18650 | 226 | 2.751634 | 6.21869284 | Pseudobdellovibrio | 2862745 | Bacteria | Bacteria | 257 | 3.97e-64 | NTclustered | gi|507148233|ref|NR_103040.1| | 453816 | g18616 | i0 | 87.5 | 171.685840707965 | 232 | 18 | 100 | 11 | 1 | 226 | 1173 | 947 | Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence | blastn | 38801 | 257 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 13388035 | 13388035 | PRJNA667863_P_NODE_17991_length_232_cov_3.534591_g17957_i0 | PRJNA667863 | 17991 | 232 | 3.534591 | 8.20025112 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 398 | 2.3099999999999995e-106 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g17957 | i0 | 97.826 | 166.336206896552 | 230 | 5 | 99 | 0 | 3 | 232 | 1293204 | 1293433 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 38590 | 398 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 20289938 | 20289938 | PRJNA667863_P_NODE_2776_length_358_cov_1.929825_g2742_i0 | PRJNA667863 | 2776 | 358 | 1.929825 | 6.9087735 | Peredibacter | 263370 | Bacteria | Bacteria | 610 | 4.46e-170 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g2742 | i0 | 97.486 | 27.7569832402235 | 358 | 8 | 100 | 1 | 1 | 358 | 512482 | 512126 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 9937 | 610 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 22311223 | 22311223 | PRJNA667863_P_NODE_10778_length_253_cov_1.950000_g10744_i0 | PRJNA667863 | 10778 | 253 | 1.95 | 4.9335 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 217 | 7.689999999999999e-52 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g10744 | i0 | 82.52 | 0.972332015810277 | 246 | 43 | 97 | 0 | 4 | 249 | 357232 | 356987 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 246 | 217 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 27144398 | 27144398 | PRJNA667863_P_NODE_9522_length_260_cov_2.588235_g9488_i0 | PRJNA667863 | 9522 | 260 | 2.588235 | 6.729411 | Bdellovibrio sp. | 28201 | Bacteria | Bacteria | 56.6 | 5.87e-7 | NR | MBI2520471.1 | 28201 | g9488 | i0 | 35.9 | 0.9 | 78 | 47 | 87.7 | 3 | 33 | 260 | 22 | 98 | MBI2520471.1 hypothetical protein [Bdellovibrio sp.] | diamond | 234 | 56.6 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. | ||
| 28408086 | 28408086 | PRJNA667863_P_NODE_6566_length_282_cov_3.315789_g6532_i0 | PRJNA667863 | 6566 | 282 | 3.315789 | 9.35052498 | Halobacteriovoraceae bacterium | 2026745 | Bacteria | Bacteria | 107 | 4.14e-25 | NR | MCB9092546.1 | 2026745 | g6532 | i0 | 48.9 | 1 | 94 | 48 | 100 | 0 | 282 | 1 | 281 | 374 | MCB9092546.1 GNAT family N-acetyltransferase [Halobacteriovoraceae bacterium] | diamond | 282 | 107 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Halobacteriovoraceae | Halobacteriovoraceae bacterium | |||
| 30429528 | 30429528 | PRJNA667863_P_NODE_14013_length_246_cov_0.890173_g13979_i0 | PRJNA667863 | 14013 | 246 | 0.890173 | 2.18982558 | Bdellovibrio sp. KM | 28201 | Bacteria | Bacteria | 90.1 | 3.76e-19 | NR | WP_181606041.1 | 2748865 | g13979 | i0 | 64.5 | 3.8780487804878 | 62 | 22 | 75.6 | 0 | 48 | 233 | 1 | 62 | WP_181606041.1 FHA domain-containing protein [Bdellovibrio sp. KM01] | diamond | 954 | 90.1 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. KM01 | ||
| 30681676 | 30681676 | PRJNA667863_P_NODE_11893_length_250_cov_0.870056_g11859_i0 | PRJNA667863 | 11893 | 250 | 0.870056 | 2.17514 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 154 | 3.689999999999999e-42 | NR | MCK6593889.1 | 2081706 | g11859 | i0 | 92.7 | 0.984 | 82 | 6 | 98.4 | 0 | 3 | 248 | 355 | 436 | MCK6593889.1 murein biosynthesis integral membrane protein MurJ [Bacteriovoracaceae bacterium] | diamond | 246 | 154 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 31061298 | 31061298 | PRJNA667863_P_NODE_155_length_1074_cov_7.158841_g136_i0 | PRJNA667863 | 155 | 1074 | 7.158841 | 76.88595234 | Oligoflexus sp. | 1971216 | Bacteria | Bacteria | 79 | 1.88e-13 | NR | WP_324954760.1 | 1971216 | g136 | i0 | 64.9 | 0.159217877094972 | 57 | 20 | 15.9 | 0 | 24 | 194 | 94 | 150 | WP_324954760.1 hypothetical protein [Oligoflexus sp.] | diamond | 171 | 79 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | Oligoflexaceae | Oligoflexus | Oligoflexus sp. | ||
| 31135944 | 31135944 | PRJNA667863_P_NODE_12695_length_248_cov_1.777143_g12661_i0 | PRJNA667863 | 12695 | 248 | 1.777143 | 4.40731464 | Bdellovibrionota | 3018035 | Bacteria | Bacteria | 150 | 1.94e-44 | NR | WP_321396602.1 | 28202 | g12661 | i0 | 90.2 | 2.9758064516129 | 82 | 8 | 99.2 | 0 | 3 | 248 | 57 | 138 | WP_321396602.1 hypothetical protein [Peredibacter starrii] | diamond | 738 | 150 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;