RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA667863" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA667863 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8287330 8287330 PRJNA667863_P_NODE_7087_length_277_cov_2.941176_g7053_i0 PRJNA667863 7087 277 2.941176 8.14705752 Methanobacteriota archaeon 2026739 Archaea Archaea 85.9 4.31e-18   NR RYE97637.1 2026739 g7053 i0 73.6 0.574007220216607 53 14 57.4 0 159 1 19 71 RYE97637.1 MAG: C1 family peptidase, partial [Methanobacteriota archaeon] diamond 159 85.9 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
24860201 24860201 PRJNA667863_P_NODE_19560_length_199_cov_4.484127_g19526_i0 PRJNA667863 19560 199 4.484127 8.92341273 Methanosarcinales archaeon 2250255 Archaea Archaea 139 1.5399999999999998e-37   NR RYE83110.1 2250255 g19526 i0 95.5 0.994974874371859 66 3 99.5 0 198 1 278 343 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 198 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
28092259 28092259 PRJNA667863_P_NODE_18265_length_230_cov_2.006369_g18231_i0 PRJNA667863 18265 230 2.006369 4.6146487 Halococcus saccharolyticus 62319 Archaea Archaea 43.9 0.0047   NR WP_006078117.1 62319 g18231 i0 40 0.782608695652174 60 36 78.3 0 46 225 37 96 WP_006078117.1 hypothetical protein [Halococcus saccharolyticus] diamond 180 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus saccharolyticus
28408089 28408089 PRJNA667863_P_NODE_8966_length_264_cov_1.340314_g8932_i0 PRJNA667863 8966 264 1.340314 3.53842896 Methanobacteriota archaeon 2026739 Archaea Archaea 43.5 0.024   NR MAO69906.1 2026739 g8932 i0 38.3 0.681818181818182 60 36 67 1 206 30 23 82 MAO69906.1 low specificity L-threonine aldolase [Methanobacteriota archaeon] diamond 180 43.5 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;