RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA667863", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA667863 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27851593 27851593 PRJNA667863_P_NODE_13484_length_247_cov_0.885057_g13450_i0 PRJNA667863 13484 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 107 4.95e-28   NR MBU8902746.1 2212475 g13450 i0 64.9 4.68825910931174 77 27 93.5 0 15 245 28 104 MBU8902746.1 hypothetical protein [Victivallales bacterium] diamond 1158 108 0.990740740740741 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
27997715 27997715 PRJNA667863_P_NODE_13045_length_248_cov_0.880000_g13011_i0 PRJNA667863 13045 248 0.88 2.1824 Lentisphaerota bacterium 1932692 Bacteria Bacteria 99.8 3.52e-22   NR NLG15614.1 1932692 g13011 i0 58.7 4.875 75 31 90.7 0 2 226 439 513 NLG15614.1 glycogen/starch/alpha-glucan phosphorylase [Lentisphaerota bacterium] diamond 1209 99.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29986827 29986827 PRJNA667863_P_NODE_2751_length_359_cov_2.146853_g2717_i0 PRJNA667863 2751 359 2.146853 7.70720227 Lentisphaerota bacterium 1932692 Bacteria Bacteria 47 0.0045   NR NQU40615.1 1932692 g2717 i0 50 0.66016713091922 46 21 38.4 1 3 140 378 421 NQU40615.1 glycosyltransferase [Lentisphaerota bacterium] diamond 237 47 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;