RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA667863" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 16 ✖

bioproject 1

  • PRJNA667863 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1910243 1910243 PRJNA667863_P_NODE_4882_length_305_cov_1.211207_g4848_i0 PRJNA667863 4882 305 1.211207 3.69418135 Prymnesium sp. 2812485 Haptophyta other_Eukaryota 118 2.8699999999999997e-31   NR KAL3914967.1 2812485 g4848 i0 80.2 3.24590163934426 81 16 79.7 0 62 304 2 82 KAL3914967.1 MAG: hypothetical protein SGPRY_007430 [Prymnesium sp.] diamond 990 118 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium sp.
4991771 4991771 PRJNA667863_P_NODE_10124_length_257_cov_1.554348_g10090_i0 PRJNA667863 10124 257 1.554348 3.99467436 Diacronema 70451 Haptophyta other_Eukaryota 154 1.6299999999999999e-43   NR KAJ1632162.1 483367 g10090 i0 78.6 2.95330739299611 84 18 98.1 0 255 4 159 242 KAJ1632162.1 defense-responsive protein, partial [Pavlovales sp. CCMP2436] diamond 759 155 0.993548387096774 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
5737437 5737437 PRJNA667863_P_NODE_1985_length_397_cov_1.160494_g1951_i0 PRJNA667863 1985 397 1.160494 4.60716118 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 220 9.85e-53   NTclustered gi|259419544|emb|FN392559.1| 2703868 g1951 i0 83.471 6.3727959697733 242 34 60 5 95 333 284 46 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 2530 220 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
8287122 8287122 PRJNA667863_P_NODE_11027_length_252_cov_1.642458_g10993_i0 PRJNA667863 11027 252 1.642458 4.13899416 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 9.999999999999999e-29   NR ALD47920.1 2903 g10993 i0 67.9 5.97619047619048 84 26 100 1 252 1 78 160 ALD47920.1 adaptor protein complex 1 subunit mu [Emiliania huxleyi] diamond 1506 115 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
8287178 8287178 PRJNA667863_P_NODE_14607_length_245_cov_0.895349_g14573_i0 PRJNA667863 14607 245 0.895349 2.19360505 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 150 7.62e-32   NTclustered gi|551577272|ref|XM_005774215.1| 280463 g14573 i0 87.121 33.2816326530612 132 17 54 0 27 158 1 132 Emiliania huxleyi CCMP1516 40S ribosomal protein S4 partial mRNA blastn 8154 150 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
8287326 8287326 PRJNA667863_P_NODE_6887_length_279_cov_2.271845_g6853_i0 PRJNA667863 6887 279 2.271845 6.33844755 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 183 8.73e-42   NTclustered gi|54399513|gb|AY729487.1| 2081491 g6853 i0 79.921 0.910394265232975 254 47 90 3 1 252 917 1168 Pavlova lutheri EF-1 alpha-like protein (efl) mRNA, partial cds blastn 254 183 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
14662833 14662833 PRJNA667863_P_NODE_10012_length_257_cov_9.815217_g9978_i0 PRJNA667863 10012 257 9.815217 25.22510769 Viridiplantae 33090 Haptophyta other_Eukaryota 141 9.37e-41   NR KAJ1623557.1 483367 g9978 i0 78.3 13.5875486381323 83 18 96.9 0 257 9 65 147 KAJ1623557.1 ribosomal protein S11 [Pavlovales sp. CCMP2436] diamond 3492 142 0.992957746478873 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
14662848 14662848 PRJNA667863_P_NODE_11432_length_251_cov_0.865169_g11398_i0 PRJNA667863 11432 251 0.865169 2.17157419 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 142 2.8299999999999993e-42   NR KAL1518757.1 97485 g11398 i0 84.6 13.1832669322709 78 12 93.2 0 18 251 1 78 KAL1518757.1 hypothetical protein AB1Y20_003041 [Prymnesium parvum] diamond 3309 142 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
22311224 22311224 PRJNA667863_P_NODE_1078_length_486_cov_24.782082_g1045_i0 PRJNA667863 1078 486 24.782082 120.44091852 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 148 2.31e-43   NR XP_005758635.1 280463 g1045 i0 86.4 13.9814814814815 81 11 50 0 432 190 3 83 XP_005758635.1 hypothetical protein EMIHUDRAFT_425447 [Emiliania huxleyi CCMP1516] diamond 6795 148 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
28408075 28408075 PRJNA667863_P_NODE_12386_length_249_cov_0.875000_g12352_i0 PRJNA667863 12386 249 0.875 2.17875 Prymnesium parvum 97485 Haptophyta other_Eukaryota 43.5 0.0217   NR KAL1523261.1 97485 g12352 i0 54.1 0.44578313253012 37 17 44.6 0 221 111 767 803 KAL1523261.1 hypothetical protein AB1Y20_018211 [Prymnesium parvum] diamond 111 43.5 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
28818174 28818174 PRJNA667863_P_NODE_18708_length_226_cov_2.006536_g18674_i0 PRJNA667863 18708 226 2.006536 4.53477136 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 124 1.5899999999999998e-31   NR KAG8463986.1 2081491 g18674 i0 77.3 1.99115044247788 75 17 99.6 0 1 225 318 392 KAG8463986.1 hypothetical protein KFE25_000154 [Diacronema lutheri] diamond 450 124 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
30788745 30788745 PRJNA667863_P_NODE_3294_length_341_cov_1.145522_g3260_i0 PRJNA667863 3294 341 1.145522 3.90623002 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 3.67e-32   NR KAL1504882.1 97485 g3260 i0 67.9 2.31378299120235 84 27 73.9 0 14 265 291 374 KAL1504882.1 hypothetical protein AB1Y20_008652 [Prymnesium parvum] diamond 789 129 0.992248062015504 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31990158 31990158 PRJNA667863_P_NODE_5738_length_290_cov_2.562212_g5704_i0 PRJNA667863 5738 290 2.562212 7.4304148 Prymnesium 35143 Haptophyta other_Eukaryota 84.3 3.44e-17   NR KAL1524175.1 97485 g5704 i0 56.2 3.77586206896552 73 32 75.5 0 219 1 96 168 KAL1524175.1 hypothetical protein AB1Y20_019084 [Prymnesium parvum] diamond 1095 85.1 0.990599294947121 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32326631 32326631 PRJNA667863_P_NODE_16039_length_242_cov_3.343195_g16005_i0 PRJNA667863 16039 242 3.343195 8.0905319 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 45.4 0.00393   NR KOO29958.1 1460289 g16005 i0 40.3 1.7603305785124 62 34 76.9 1 229 44 249 307 KOO29958.1 calcium-dependent protein kinase family protein [Chrysochromulina tobinii] diamond 426 45.4 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
32496652 32496652 PRJNA667863_P_NODE_14839_length_245_cov_0.895349_g14805_i0 PRJNA667863 14839 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 3.22e-31   NR KAL1523551.1 97485 g14805 i0 70.4 4.95918367346939 81 24 99.2 0 2 244 19 99 KAL1523551.1 hypothetical protein AB1Y20_018487 [Prymnesium parvum] diamond 1215 116 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32685651 32685651 PRJNA667863_P_NODE_18660_length_226_cov_2.627451_g18626_i0 PRJNA667863 18660 226 2.627451 5.93803926 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 91.7 8.270000000000001e-22   NR KAL1495466.1 97485 g18626 i0 74.1 3.51769911504425 58 15 77 0 174 1 15 72 KAL1495466.1 hypothetical protein AB1Y20_016832 [Prymnesium parvum] diamond 795 91.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;