RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA666695" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3183553 3183553 PRJNA666695_S_NODE_51583_length_290_cov_2.630522_g50489_i0 PRJNA666695 51583 290 2.630522 7.6285138 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 261 4.1e-65   NTclustered gi|511487963|gb|JX898537.1| 1260765 g50489 i0 92.391 56.2793103448276 184 12 63 2 83 265 360 178 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16321 261 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
13385818 13385818 PRJNA666695_S_NODE_1991_length_1077_cov_38.260618_g1481_i0 PRJNA666695 1991 1077 38.260618 412.06685586 Cucurbitella mespiliformis 2892967 Tubulinea other_Eukaryota 172 8.06e-38   NTclustered gi|2130834914|gb|MW960411.1| 2892967 g1481 i0 78.81 17.3481894150418 269 47 25 10 77 340 352 89 Cucurbitella mespiliformis voucher M41 cytochrome oxidase subunit I-like gene, partial sequence; mitochondrial blastn 18684 172 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Netzeliidae Cucurbitella Cucurbitella mespiliformis
15933042 15933042 PRJNA666695_S_NODE_111553_length_208_cov_2.640719_g110459_i0 PRJNA666695 111553 208 2.640719 5.49269552 Arcella discoides 1078856 Tubulinea other_Eukaryota 148 2.2599999999999996e-31   NTclustered gi|345452542|gb|JF694289.1| 1078856 g110459 i0 81.183 25.5673076923077 186 33 89 2 15 199 602 786 Arcella discoides isolate DL3_98 clone 3 actin gene, partial cds blastn 5318 148 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
17209997 17209997 PRJNA666695_S_NODE_2594_length_958_cov_5.037077_g1999_i0 PRJNA666695 2594 958 5.037077 48.25519766 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 1319 0   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g1999 i0 91.598 30.062630480167 964 68 100 12 1 958 136 1092 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 28800 1319 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
20288928 20288928 PRJNA666695_S_NODE_142016_length_183_cov_2.190141_g140922_i0 PRJNA666695 142016 183 2.190141 4.00795803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 259 8.56e-65   NTclustered gi|399764274|gb|JQ271785.1| 1215994 g140922 i0 97.368 10.3770491803279 152 4 83 0 1 152 152 1 Tubulinea group 04 sp. BCHM5 18S ribosomal RNA gene, partial sequence blastn 1899 259 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. BCHM5
31831809 31831809 PRJNA666695_S_NODE_115577_length_204_cov_4.662577_g114483_i0 PRJNA666695 115577 204 4.662577 9.51165708 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.7 0.00454   NR AAD37351.1 5775 g114483 i0 40.8 2.60294117647059 49 29 72.1 0 2 148 18 66 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 531 44.7 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;