RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA666695" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA666695 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
631823 631823 PRJNA666695_S_NODE_192281_length_152_cov_1.648649_g191187_i0 PRJNA666695 192281 152 1.648649 2.50594648 Victivallis 172900 Bacteria Bacteria 85.5 4.11e-18   NR WP_294433618.1 2049020 g191187 i0 76 12.7697368421053 50 12 98.7 0 1 150 145 194 WP_294433618.1 GTPase ObgE [Victivallis sp.] diamond 1941 85.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis sp.
27346644 27346644 PRJNA666695_S_NODE_130563_length_192_cov_1.523179_g129469_i0 PRJNA666695 130563 192 1.523179 2.92450368 Bacteria 2 Bacteria Bacteria 60.8 7.9e-9   NR MBE6379026.1 1932692 g129469 i0 47.4 2.859375 57 30 89.1 0 174 4 31 87 MBE6379026.1 sel1 repeat family protein [Lentisphaerota bacterium] diamond 549 60.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28861960 28861960 PRJNA666695_S_NODE_57488_length_278_cov_1.953586_g56394_i0 PRJNA666695 57488 278 1.953586 5.43096908 root 1 Root_unresolved Root_unresolved 56.2 1.01e-6   NR OGV51468.1 1798571 g56394 i0 38.8 4.46762589928058 80 45 86.3 2 246 7 107 182 OGV51468.1 MAG: hypothetical protein A2017_13380 [Lentisphaerae bacterium GWF2_44_16] diamond 1242 56.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_44_16
29860357 29860357 PRJNA666695_S_NODE_24811_length_382_cov_5.818182_g23718_i0 PRJNA666695 24811 382 5.818182 22.22545524 Lentisphaerota bacterium 1932692 Bacteria Bacteria 97.8 3.4800000000000006e-21   NR MBM4156571.1 1932692 g23718 i0 48 2.28534031413613 98 46 73 1 25 303 280 377 MBM4156571.1 response regulator [Lentisphaerota bacterium] diamond 873 97.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;