RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA666695" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA666695 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17208288 17208288 PRJNA666695_S_NODE_115874_length_204_cov_2.619632_g114780_i0 PRJNA666695 115874 204 2.619632 5.34404928 Methanocaldococcus vulcanius 73913 Archaea Archaea 54.7 0.005   NTclustered gi|261369124|gb|CP001787.1| 579137 g114780 i0 100 0.142156862745098 29 0 14 0 33 61 776243 776271 Methanocaldococcus vulcanius M7, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius
18484908 18484908 PRJNA666695_S_NODE_47595_length_299_cov_3.468992_g46501_i0 PRJNA666695 47595 299 3.468992 10.37228608 Methanobrevibacter arboriphilus 39441 Archaea Archaea 58.4 5.98e-4   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g46501 i0 97.059 0.11371237458194 34 1 11 0 119 152 1776465 1776432 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 34 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
27977946 27977946 PRJNA666695_S_NODE_157265_length_173_cov_1.007576_g156171_i0 PRJNA666695 157265 173 1.007576 1.74310648 root 1 Root_unresolved Root_unresolved 92.4 4.52e-21   NR MEN6292300.1 2164 g156171 i0 70.2 16.7341040462428 57 17 98.8 0 1 171 51 107 MEN6292300.1 pyridoxal-dependent decarboxylase [Methanobacterium sp.] diamond 2895 92.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
28293651 28293651 PRJNA666695_S_NODE_62626_length_268_cov_6.409692_g61532_i0 PRJNA666695 62626 268 6.409692 17.17797456 Methanobacterium 2160 Archaea Archaea 49.7 1.36e-4   NR WP_081882666.1 2160 g61532 i0 32.9 3.36940298507463 76 47 85.1 1 3 230 160 231 WP_081882666.1 MULTISPECIES: proteasome assembly chaperone family protein [Methanobacterium] diamond 903 49.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium  
28660663 28660663 PRJNA666695_S_NODE_4927_length_729_cov_12.475291_g4139_i0 PRJNA666695 4927 729 12.475291 90.94487139 Methanobacterium sp. 2164 Archaea Archaea 104 1.07e-21   NR MEN6291050.1 2164 g4139 i0 33.2 0.818930041152263 199 127 80.2 5 96 680 150 346 MEN6291050.1 hypothetical protein [Methanobacterium sp.] diamond 597 104 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29165997 29165997 PRJNA666695_S_NODE_70369_length_256_cov_2.423256_g69275_i0 PRJNA666695 70369 256 2.423256 6.20353536 Methanobrevibacter ruminantium 83816 Archaea Archaea 42.4 0.0355   NR WP_304103586.1 83816 g69275 i0 44.2 0.50390625 43 18 50.4 1 255 127 81 117 WP_304103586.1 GNAT family N-acetyltransferase [Methanobrevibacter ruminantium] diamond 129 42.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;