RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA665531" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA665531 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13383634 13383634 PRJNA665531_P_NODE_9231_length_345_cov_1.132353_g8995_i0 PRJNA665531 9231 345 1.132353 3.90661785 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 385 2.83e-102   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g8995 i0 89.068 71.1536231884058 311 32 90 1 37 345 3990870 3990560 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 24548 385 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
19756099 19756099 PRJNA665531_P_NODE_10736_length_318_cov_1.065306_g10500_i0 PRJNA665531 10736 318 1.065306 3.38767308 Opitutus sp. GAS368 1882749 Bacteria Bacteria 492 1.48e-134   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g10500 i0 94.671 116.64465408805 319 14 100 3 1 318 2834193 2834509 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 37093 492 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
21031805 21031805 PRJNA665531_P_NODE_14597_length_271_cov_1.555556_g14361_i0 PRJNA665531 14597 271 1.555556 4.21555676 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 95.3 4.07e-15   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g14361 i0 74.088 3.65682656826568 274 52 98 18 1 265 5627246 5626983 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 991 95.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;