RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA665531" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5732767 5732767 PRJNA665531_P_NODE_15825_length_260_cov_1.556150_g15589_i0 PRJNA665531 15825 260 1.55615 4.04599 Fretibacterium fastidiosum 651822 Bacteria Bacteria 350 7.5e-92   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g15589 i0 91.732 35.0269230769231 254 17 99 4 2 254 68585 68835 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 9107 350 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
9557912 9557912 PRJNA665531_P_NODE_2228_length_775_cov_2.717949_g2030_i0 PRJNA665531 2228 775 2.717949 21.06410475 Fretibacterium fastidiosum 651822 Bacteria Bacteria 833 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g2030 i0 87.145 92.1767741935484 739 89 97 6 34 769 70155 69420 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 71437 833 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
12108543 12108543 PRJNA665531_P_NODE_11830_length_302_cov_1.257642_g11594_i0 PRJNA665531 11830 302 1.257642 3.79807884 Fretibacterium fastidiosum 651822 Bacteria Bacteria 453 6.6e-123   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g11594 i0 93.709 316.655629139073 302 19 100 0 1 302 69242 68941 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 95630 453 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;