RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA665531" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13383380 13383380 PRJNA665531_P_NODE_17511_length_249_cov_0.875000_g17275_i0 PRJNA665531 17511 249 0.875 2.17875 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 94.4 2.5e-20   NR MDX2165453.1 2026735 g17275 i0 81.7 0.72289156626506 60 11 72.3 0 1 180 448 507 MDX2165453.1 uroporphyrinogen-III C-methyltransferase [Deltaproteobacteria bacterium] diamond 180 94.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
19756259 19756259 PRJNA665531_P_NODE_17736_length_248_cov_0.880000_g17500_i0 PRJNA665531 17736 248 0.88 2.1824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 141 5e-38   NR MDX2165772.1 2026735 g17500 i0 89 1.98387096774194 82 9 99.2 0 246 1 85 166 MDX2165772.1 sigma-54 dependent transcriptional regulator [Deltaproteobacteria bacterium] diamond 492 141 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
21031789 21031789 PRJNA665531_P_NODE_13717_length_280_cov_0.975845_g13481_i0 PRJNA665531 13717 280 0.975845 2.732366 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 140 2.99e-36   NR MDX2165769.1 2026735 g13481 i0 88 0.985714285714286 92 11 98.6 0 3 278 338 429 MDX2165769.1 CHASE3 domain-containing protein [Deltaproteobacteria bacterium] diamond 276 140 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29797044 29797044 PRJNA665531_P_NODE_20231_length_227_cov_2.071429_g19995_i0 PRJNA665531 20231 227 2.071429 4.70214383 Corallococcus exercitus 2316736 Bacteria Bacteria 60.8 1.24e-8   NR WP_120526964.1 2316736 g19995 i0 80 0.462555066079295 35 7 46.3 0 226 122 582 616 WP_120526964.1 ABC transporter ATP-binding protein [Corallococcus exercitus] diamond 105 60.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
30997825 30997825 PRJNA665531_P_NODE_11914_length_301_cov_1.013158_g11678_i0 PRJNA665531 11914 301 1.013158 3.04960558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 114 5.1e-27   NR MCC6620584.1 2026735 g11678 i0 63.9 0.717607973421927 72 26 71.8 0 72 287 412 483 MCC6620584.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 114 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32136359 32136359 PRJNA665531_P_NODE_18438_length_245_cov_0.895349_g18202_i0 PRJNA665531 18438 245 0.895349 2.19360505 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 162 2.46e-44   NR MBK7066338.1 2026735 g18202 i0 94.9 2.90204081632653 79 4 96.7 0 239 3 928 1006 MBK7066338.1 BamA/TamA family outer membrane protein [Deltaproteobacteria bacterium] diamond 711 162 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;