RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA665531" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA665531 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17207376 17207376 PRJNA665531_P_NODE_17514_length_249_cov_0.875000_g17278_i0 PRJNA665531 17514 249 0.875 2.17875 Roseisolibacter agri 2014610 Bacteria Bacteria 134 5.18e-35   NR WP_284348110.1 2014610 g17278 i0 86.6 1.97590361445783 82 11 98.8 0 248 3 31 112 WP_284348110.1 MATE family efflux transporter [Roseisolibacter agri] diamond 492 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
17740190 17740190 PRJNA665531_P_NODE_20274_length_226_cov_2.607843_g20038_i0 PRJNA665531 20274 226 2.607843 5.89372518 Longimicrobium sp. 2029185 Bacteria Bacteria 114 1.88e-27   NR HEU0299248.1 2029185 g20038 i0 81.1 1.9646017699115 74 14 98.2 0 3 224 1118 1191 HEU0299248.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 444 114 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
24855471 24855471 PRJNA665531_P_NODE_12600_length_292_cov_1.762557_g12364_i0 PRJNA665531 12600 292 1.762557 5.14666644 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 399 8.389999999999999e-107   NTclustered gi|2874253938|emb|OY970263.1| 412054 g12364 i0 91.986 89.236301369863 287 19 98 4 8 292 801973 802257 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 26057 399 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;