RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA665531", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA665531 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1162272 1162272 PRJNA665531_P_NODE_2341_length_755_cov_2.794721_g2139_i0 PRJNA665531 2341 755 2.794721 21.10014355 Caldilinea 233191 Bacteria Bacteria 1086 0   NTclustered gi|470476010|ref|NR_076314.1| 133453 g2139 i0 92.602 552.275496688742 757 54 100 2 1 755 2150 2906 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 416968 1086 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
27492340 27492340 PRJNA665531_P_NODE_17543_length_249_cov_0.875000_g17307_i0 PRJNA665531 17543 249 0.875 2.17875 Ktedonobacter sp. SOSP1-52 2778366 Bacteria Bacteria 132 9.489999999999999e-35   NR WP_201392464.1 2778366 g17307 i0 74.7 8 83 21 100 0 1 249 297 379 WP_201392464.1 cytochrome P450 [Ktedonobacter sp. SOSP1-52] diamond 1992 132 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter sp. SOSP1-52

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;