RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA665531", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA665531 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4457259 4457259 PRJNA665531_P_NODE_17844_length_247_cov_2.655172_g17608_i0 PRJNA665531 17844 247 2.655172 6.55827484 Ambispora gerdemannii 144530 Fungi Fungi 77 1.63e-16   NR CAG8616248.1 144530 g17608 i0 68.3 0.765182186234818 63 18 75.3 2 18 203 1 62 CAG8616248.1 1368_t:CDS:2 [Ambispora gerdemannii] diamond 189 77 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Archaeosporales Ambisporaceae Ambispora Ambispora gerdemannii
21564271 21564271 PRJNA665531_P_NODE_14217_length_275_cov_1.396040_g13981_i0 PRJNA665531 14217 275 1.39604 3.83911 Mucorales 4827 Fungi Fungi 470 5.89e-128   NTclustered gi|909719411|gb|KR809877.1| 29924 g13981 i0 100 38.1090909090909 254 0 92 0 1 254 6356 6103 Mucor circinelloides f. lusitanicus strain CBS 277.49 mitochondrion, complete genome blastn 10480 470 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor lusitanicus
27567423 27567423 PRJNA665531_P_NODE_15044_length_267_cov_1.587629_g14808_i0 PRJNA665531 15044 267 1.587629 4.23896943 Mucoromycota 1913637 Fungi Fungi 93.2 7.64e-20   NR XP_069239939.1 4840 g14808 i0 74 9.1685393258427 50 13 56.2 0 117 266 112 161 XP_069239939.1 uncharacterized protein VTP01DRAFT_9519 [Rhizomucor pusillus] diamond 2448 93.6 0.995726495726496 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Rhizomucor Rhizomucor pusillus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;