RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA664479" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA664479 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8282382 8282382 PRJNA664479_S_NODE_19107_length_160_cov_5.531532_g19031_i0 PRJNA664479 19107 160 5.531532 8.8504512 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 291 2.5799999999999998e-74   NTclustered gi|56757963|gb|AY815390.1| 6182 g19031 i0 99.375 127.04375 160 1 100 0 1 160 1761 1920 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 20327 291 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28692284 28692284 PRJNA664479_S_NODE_7287_length_208_cov_0.981132_g7211_i0 PRJNA664479 7287 208 0.981132 2.04075456 Paragonimus skrjabini miyazakii 59628 Platyhelminthes Platyhelminthes 54.7 1.19e-6   NR KAF7255958.1 59628 g7211 i0 56.1 0.951923076923077 66 29 95.2 0 200 3 213 278 KAF7255958.1 hypothetical protein EG68_07521 [Paragonimus skrjabini miyazakii] diamond 198 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus skrjabini miyazakii
29039645 29039645 PRJNA664479_S_NODE_8268_length_200_cov_0.900662_g8192_i0 PRJNA664479 8268 200 0.900662 1.801324 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 41.6 0.0154   NR XP_018651254.1 6183 g8192 i0 51.9 0.81 54 26 81 0 1 162 15 68 XP_018651254.1 uncharacterized protein Smp_202130 [Schistosoma mansoni] diamond 162 41.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
31155341 31155341 PRJNA664479_S_NODE_9835_length_189_cov_1.092857_g9759_i0 PRJNA664479 9835 189 1.092857 2.06549973 Fasciolopsis buskii 27845 Platyhelminthes Platyhelminthes 48.5 1.67e-4   NR KAA0201066.1 27845 g9759 i0 49.1 4.46031746031746 53 27 84.1 0 7 165 179 231 KAA0201066.1 T-complex protein 1 subunit zeta, partial [Fasciolopsis buskii] diamond 843 48.9 0.991820040899796 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciolopsis Fasciolopsis buskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;