RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA664479" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA664479 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27662428 27662428 PRJNA664479_S_NODE_13644_length_169_cov_2.083333_g13568_i0 PRJNA664479 13644 169 2.083333 3.52083277 Opisthokonta 33154 Nematoda Nematoda 42 0.0262   NR VDP15419.1 387005 g13568 i0 44.2 9.92307692307692 43 24 76.3 0 5 133 127 169 VDP15419.1 unnamed protein product [Onchocerca flexuosa] diamond 1677 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa
27965821 27965821 PRJNA664479_S_NODE_2585_length_309_cov_1.461538_g2509_i0 PRJNA664479 2585 309 1.461538 4.51615242 Meloidogyne javanica 6303 Nematoda Nematoda 57.8 5.74e-8   NR AAC47746.1 6303 g2509 i0 48.4 6.79611650485437 91 47 88.3 0 23 295 42 132 AAC47746.1 elongation factor 1-alpha, partial [Meloidogyne javanica] diamond 2100 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne javanica
29733756 29733756 PRJNA664479_S_NODE_8790_length_196_cov_1.074830_g8714_i0 PRJNA664479 8790 196 1.07483 2.1066668 Teladorsagia circumcincta 45464 Nematoda Nematoda 48.9 1.33e-4   NR PIO75738.1 45464 g8714 i0 48.3 1.83673469387755 60 31 91.8 0 7 186 312 371 PIO75738.1 Tubulin/FtsZ family, GTPase domain protein [Teladorsagia circumcincta] diamond 360 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
29828673 29828673 PRJNA664479_S_NODE_12131_length_176_cov_1.535433_g12055_i0 PRJNA664479 12131 176 1.535433 2.70236208 Trichinella sp. T6 92179 Nematoda Nematoda 40.4 0.0118   NR KRX30208.1 92179 g12055 i0 63.6 0.5625 33 12 56.3 0 76 174 4 36 KRX30208.1 hypothetical protein T06_7420, partial [Trichinella sp. T6] diamond 99 40.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T6
31863492 31863492 PRJNA664479_S_NODE_8137_length_201_cov_0.940789_g8061_i0 PRJNA664479 8137 201 0.940789 1.89098589 Metazoa 33208 Nematoda Nematoda 42.4 0.0287   NR PIO75738.1 45464 g8061 i0 40.9 2.80597014925373 66 39 98.5 0 2 199 315 380 PIO75738.1 Tubulin/FtsZ family, GTPase domain protein [Teladorsagia circumcincta] diamond 564 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;