RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA664479" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA664479 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27618692 27618692 PRJNA664479_S_NODE_6104_length_221_cov_0.930233_g6028_i0 PRJNA664479 6104 221 0.930233 2.05581493 Asterias rubens 7604 Echinodermata other_Eukaryota 50.1 7.24e-5   NR XP_033635398.1 7604 g6028 i0 44 2.03619909502262 50 28 67.9 0 65 214 479 528 XP_033635398.1 T-complex protein 1 subunit theta-like [Asterias rubens] diamond 450 50.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
29197409 29197409 PRJNA664479_S_NODE_16389_length_164_cov_0.956522_g16313_i0 PRJNA664479 16389 164 0.956522 1.56869608 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 67.4 9.26e-12   NR XP_030852896.1 7668 g16313 i0 60.4 82.3536585365854 53 21 97 0 164 6 157 209 XP_030852896.1 casein kinase II subunit beta isoform X2 [Strongylocentrotus purpuratus] diamond 13506 67.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
31788045 31788045 PRJNA664479_S_NODE_13137_length_171_cov_4.426230_g13061_i0 PRJNA664479 13137 171 4.42623 7.5688533 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 42 0.0278   NR NP_001032719.1 7668 g13061 i0 38.9 0.947368421052632 54 33 94.7 0 162 1 781 834 NP_001032719.1 sarco/endoplasmic reticulum calcium transporting ATPase [Strongylocentrotus purpuratus] diamond 162 42 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;