RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA664479", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA664479 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28723679 28723679 PRJNA664479_S_NODE_17447_length_163_cov_0.894737_g17371_i0 PRJNA664479 17447 163 0.894737 1.45842131 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 68.2 6e-12   NR HLW58119.1 2081706 g17371 i0 79.5 0.717791411042945 39 8 71.8 0 163 47 215 253 HLW58119.1 tRNA pseudouridine(38-40) synthase TruA [Bacteriovoracaceae bacterium] diamond 117 68.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
30555211 30555211 PRJNA664479_S_NODE_5093_length_236_cov_0.786096_g5017_i0 PRJNA664479 5093 236 0.786096 1.85518656 Halobacteriovorax sp. DA5 2067553 Bacteria Bacteria 54.7 1.49e-7   NR WP_158246958.1 2067553 g5017 i0 71.9 15.4576271186441 32 9 40.7 0 235 140 60 91 WP_158246958.1 hypothetical protein, partial [Halobacteriovorax sp. DA5] diamond 3648 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. DA5
30713354 30713354 PRJNA664479_S_NODE_8914_length_195_cov_1.273973_g8838_i0 PRJNA664479 8914 195 1.273973 2.48424735 Oligoflexales bacterium 2687297 Bacteria Bacteria 62.8 1.64e-9   NR MBF0440467.1 2687297 g8838 i0 55.6 15.5076923076923 63 28 96.9 0 194 6 262 324 MBF0440467.1 F0F1 ATP synthase subunit beta [Oligoflexales bacterium] diamond 3024 62.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;