RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA664479" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA664479 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9557641 9557641 PRJNA664479_S_NODE_15948_length_165_cov_0.879310_g15872_i0 PRJNA664479 15948 165 0.87931 1.4508615 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 239 9.87e-59   NTclustered gi|31789464|gb|AY281356.1| 171953 g15872 i0 92.727 65.8181818181818 165 12 100 0 1 165 12142 11978 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 10860 239 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
28218213 28218213 PRJNA664479_S_NODE_18206_length_162_cov_0.902655_g18130_i0 PRJNA664479 18206 162 0.902655 1.4623011 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 100 7.26e-24   NR HTH37013.1 2283092 g18130 i0 86.8 0.981481481481482 53 7 98.1 0 161 3 197 249 HTH37013.1 methionyl-tRNA formyltransferase [Pyrinomonadaceae bacterium] diamond 159 100 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29102665 29102665 PRJNA664479_S_NODE_9988_length_188_cov_1.172662_g9912_i0 PRJNA664479 9988 188 1.172662 2.20460456 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 42 0.0336   NR HLZ40694.1 2771375 g9912 i0 40 1.88297872340426 40 24 63.8 0 18 137 360 399 HLZ40694.1 serine hydrolase domain-containing protein [Candidatus Sulfotelmatobacter sp.] diamond 354 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;